ON-TARGETplus SMARTpool siRNA targeting RHOA, RAC1, RAC2, CDC42, and the nontargeting (control) pool were transfected into senescent IMR-90 cells with Dharmafect 1 reagent (all from Dharmacon). Cells were washed 24 h after transfection; transfer assay, cell viability assay, and evaluation of knockdown were performed 48 h later.
For retroviral transductions, the following plasmids were used: pLPC mCherry or pLPC EGFP (mCherry or GFP fused to the gene of interest from an internal CMV promoter with a puromycin resistance gene driven by the LTR). Cells were infected with mCherry-H-Ras12V, GFP, or mCherry alone. Retrovirus-mediated gene transfer was performed as previously described.
Total RNA was isolated using a NucleoSpin kit (Macherey Nagel) and reverse-transcribed using the RevertAid H Minus first strand cDNA synthesis kit (Fermentas). The cDNA samples were used for real-time PCR (Fast SYBR Green master mix, Applied Biosystems). PCR amplifications were carried out using StepOnePlus real-time PCR systems (Applied Biosystems). The relative expression of each gene was normalized using the expression levels of GAPDH.