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Inverted fluorescence microscope

Manufactured by Olympus
Sourced in Japan, United States, China, Germany, United Kingdom

The Olympus Inverted Fluorescence Microscope is a laboratory instrument designed for the observation and analysis of fluorescently labeled specimens. It features a reversed optical path, allowing the specimen to be illuminated and observed from below. This configuration is particularly suitable for live cell imaging and other applications where access to the sample from above is limited.

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836 protocols using inverted fluorescence microscope

1

Sphere Formation Assay for Cancer Stem Cells

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NCI‐H446 and NCI‐H1048 cells (1 × 103) were seeded in ultralow attachment 6‐well plates (Corning) in DMEM/F12 (Gibco) supplemented with 20 μL/mL B27 (Gibco), 20 ng/mL epidermal growth factor (Gibco), and 20 ng/mL basic fibroblast growth factor (PeproTech, Hamada, Rehovot, Israel). After culture for one week, the number and diameters of spheres were determined under an inverted fluorescence microscope (Olympus, Tokyo, Japan).
For the second‐passage sphere formation, the first‐passage spheroids were trypsinized by trypsin (Gibco) and plated in 6‐well plates at a density of 1 × 103 cell/well in the media described above. After culture for one week, the numbers and diameters of spheres were determined under an inverted fluorescence microscope (Olympus).
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2

Evaluating Cancer Cell Migration and Invasion

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MCF-7 and MDA-MB-231 cells were seeded in a 6-well plate at a density of 4×105 cells/well and were cultured overnight. After transfection, when the cell confluence reached ~90%, a 200-µl pipette was used to scratch the wells. Then, the cells were rinsed twice with PBS and cultured with serum-free RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.). At 0 and 48 h after scratching, the wound healing was imaged using an inverted fluorescence microscope (Olympus Corporation; magnification, ×10).
The Transwell assay was conducted using Transwell inserts in 24-well plates (pore size, 8 µm; Corning, Inc.). The upper surface of the membrane was pre-coated with Matrigel (BD Biosciences) at 37°C for 30 min. A total of 1×105 cells suspended in RPMI-1640 medium without FBS were seeded into the upper chamber, and the lower chamber was filled with cell medium supplemented with 10% FBS. After incubation for 48 h, the cells invading in the lower chamber were fixed in 4% paraformaldehyde for 15 min at room temperature and stained with 0.1% crystal violet solution for 30 min at room temperature. Then, invading cells were counted and imaged using an inverted fluorescence microscope (Olympus Corporation; magnification, ×100).
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3

Fluorescence-Based Autophagy Monitoring

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Autophagy is characterized by formation of acidic vesicular organelles (autophagosomes and autolysosomes). AO, a fluorescent weak base, causes such acidic compartments to fluoresce bright red, and the cytoplasm and nucleolus to fluoresce bright green and dim green, respectively. Cells were plated on coverslips, washed in PBS with 5% fBS and then stained with AO (100 µg/ml) in the dark for 15 min at room temperature. Staining was performed in the presence of various drugs or their vehicles, as indicated. Cells were then washed twice with PBS and analyzed under an inverted fluorescence microscope (Olympus) with a x40 objective.
Acidic compartment detection with LysoTracker Red. Cells were incubated for 15 min in PBS containing LysoTracker Red DND-99 (100 nM), a fluorescent acidotropic probe with a high selectivity for acidic organelles and showing good retention after aldehyde fixation. After washing with PBS, cells were fixed with 4% paraformaldehyde in PBS for 30 min at room temperature, washed twice with PBS, and then analyzed under the inverted fluorescence microscope (Olympus) with a x40 objective.
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4

Histological Analysis of Thoracic Aorta

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Thoracic aortas slices (5 μm thick) were deparaffinized and subjected to hematoxylin-eosin (HE) staining (Service Biological Technology Co., Ltd., Wuhan, China). Images of three microscopic fields in each slice were captured (magnification, ×400) under an inverted fluorescence microscope (Olympus, Tokyo, Japan), and the relative count of vascular smooth muscle cells (VSMCs) was measured by Image-Pro Plus 6.0 software, independent of the orientation, form or size of cell nucleus.
Thoracic aortas slices (5 μm thick) were deparaffinized and subjected to Masson staining (Service Biological Technology Co., Ltd., Wuhan, China). Images of three microscopic fields in each slice were captured (magnification, ×400) under an inverted fluorescence microscope (Olympus, Tokyo, Japan), and collagen deposition in the vascular wall was analyzed using Image-Pro Plus 6.0 (Media Cybernetics, Inc., Rockville, MD, United States). The ratio of collagen (blue) to the fixed area of the thoracic aorta was calculated as the result of semi-quantitative analysis of collagen deposition.
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5

Immunofluorescence Analysis of Cell Culture and Tissue Sections

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The cells were plated on crystal 6-well slice at the density of 5 × 105/ml in the culture plates, and treated with Dex and different groups of exosomes for 24 h. The samples were washed thrice in PBS, fixed in 4% paraformaldehyde, and permeabilized for 15 min with 0.1% TritonX-100 in PBS. The 5% bovine serum albumin was used to block cells at 37 °C for 1 h, followed by washing with PBS, and culturing with primary antibodies against Col-I (1:200, abcam, USA), or overnight at 4 °C. The TRITC Phalloidin, Alexa Fluor®488-labeled secondary antibodies (1:400, abcam, USA) and DAPI solution (1:10) were added in sequence for 20 min, 1 h and 5 min at room temperature respectively, followed by 3 times rinsing in PBS. The images were captured by an inverted fluorescence microscope (Olympus, Japan). As for histofluorescence, the sections were deparaffinized and hydrated and incubated with a mixture of EMCN (1:200, Invitrogen, USA) and CD31(1:200, Invitrogen, USA). After washed with PBS, sections were incubated with secondary antibodies: Alexa Fluor 488-conjugated and Alexa Fluor 594-conjugated (1:200, Abcam) at room temperature for 30 min. The nuclei were stained with DAPI solution. The images were captured by an inverted fluorescence microscope (Olympus, Japan).
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6

Immunofluorescence Staining of VIM and CDH1

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To help further assess differential protein expression, cells were fixed, blocked and stained as reported (Person et al., 2013 (link)), followed by incubations in primary and secondary antibodies for VIM and CDH1. The secondary antibody was conjugated with Alexa Fluor 568, followed by DAPI nuclear staining. An automated Olympus inverted fluorescence microscope was used to capture photomicrographs. CellSens software (Olympus Corporation) was used to process the images for all groups.
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7

Immunofluorescence Characterization of Neural Cells

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When cells reached 70-80% confluence, they were fixed with 4% paraformaldehyde overnight at 4°C. The cells were then blocked and permeabilized for 1 h at 37°C in PBS with 2% bovine serum albumin (BSA; Thermo Fisher, USA) and 0.1% Triton X-100, followed by incubation with rabbit anti-nestin (Boster, China), rabbit anti-pax6 (Boster, China), rabbit anti-GFAP (Boster, China), rabbit anti-S100 (Boster, China), and rabbit anti-β-III tubulin (Applied Biological Materials Inc., Canada) at the appropriate dilution overnight at 4°C. After washing with PBS, the cells were incubated at 37°C for 2 h with appropriate secondary antibodies: CyTM3-conjugated AffiniPure goat anti-rabbit IgG (H+L) (Jackson, USA). Nuclei were counterstained with DAPI. Images were captured using an Olympus inverted fluorescence microscope (IX73, Olympus, USA).
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8

Immunofluorescence Analysis of Stem Cell Markers

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SiHa, CaSki, and U2OS cells and oncospheres were seeded and cultured on small confocal dishes. The cells were fixed with 4% paraformaldehyde for 0.5–1 hr at 4°C, permeabilized with 0.1% Triton X-100 (Solarbio, T8200-100) for 30 mins at room temperature, then blocked with 2% BSA for 1 hr at room temperature. The cells were then incubated with anti-SOX2 or anti-OCT4 antibodies overnight at 4°C, then washed by PBS, and then mounted in medium containing secondary antibodies (CST) and DAPI (Sigma-Aldrich, D9542). Images were obtained with an Olympus inverted fluorescence microscope (Olympus, Tokyo, Japan) and were outputted to the MetaMoph offline 7.7.8.0 software package (Olympus) for analysis.
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9

GPC3 Expression Visualization in Cells

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Cells were seeded into 96-well cell-culture plates (#TCP011024, JET BIOFIL) with 1 × 105 cells/0.1 ml/well, After 24 h culture, the supernatants were discarded and the cells were rinsed twice with 100 μl of sterile PBS, then 100 μl of 2 μg/ml anti-hGPC3 scFv-SpyTag diluted with PBS containing 2% FBS was added to each well and incubated at room temperature (RT) for 15 min with gentle shaking. After washing with PBS, 100 μl of 1.5 μg/ml fluorescein isothiocyanate (FITC)-labeled goat anti-mouse IgG F(ab’)2 fragment (#115-095-072, Jackson ImmunoResearch Laboratories) was added and incubated at RT for 15 min. After the final wash, 100 μl of sterile PBS was added to each well and the results were observed; images were captured with an Olympus inverted fluorescence microscope (Olympus, Tokyo, Japan).
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10

Apoptosis Evaluation via AO/EB Staining

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AO/EB staining was performed to study cell apoptosis post transfection as described previously [40 (link),41 (link)]. Cells at a density of 1.2 × 105 cells/well were plated into a 24-well plate and incubated overnight for attachment. Thereafter, complexes were added to the cells at their various binding ratios and incubated for 24 h. The cells were then washed twice with PBS, and 10 μL of AO/EB dye (100 μg/mL AO and 100 μg/mL EB in PBS) was added. Cells were stained at room temperature for 5 min. Thereafter, the dye was removed, and the cells were viewed under an Olympus inverted fluorescence microscope fitted with a CC12 fluorescent camera (excitation filter of 450–490 nm and a barrier filter of 520 nm) (Wirsam Scientific and Precision Eq. LTD., Johannesburg, South Africa) at X200 magnification. Cells were examined for morphological changes due to apoptosis. Apoptosis was represented as an index, calculated as shown below:
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