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218 protocols using mito tracker green

1

Mitochondrial Labeling and Nuclear Staining

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Mito-tracker green was purchased from Beyotime Corporation (Shanghai, China), and the cells were incubated with Mito-tracker green probes for 30 min. Once the mitochondria were labeled, the cells were fixed with 4% paraformaldehyde, and the cell nuclei were stained with DAPI for 5 min. Detailed procedures were performed according to the manufacturer’s protocol.
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2

Visualizing Mitochondrial Dynamics and Calcium Signaling

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HCT116 cells transiently transfected with pcDNA3.1-GFP-LC3 vector for 48 h was treated with DMSO or INZ (12.8 μM) for 24 h, the cells were respectively incubated with or without 10 μM CCCP for 2 h. The mitochondria were stained with 100 nM Mito-Tracker Red (Thermo Fisher Scientific) for 20 min and then subjected to confocal laser scanning microscope (LSM 880 with AiryScan, Carl Zeiss) for analysis. For colocalization of mitochondria and lysosome, the mitochondria were stained with Mito-Tracker Green (100 nM, Beyotime) for 15 min; lysosome was stained with Lyso-Tracker Red (50 nM, Beyotime) for 10 min.
For determination of mitochondrial Ca2+, cells were loaded with Rhod-2AM (1 μM) at 37 °C for 30 min. Subsequently, the treated cells were loaded with Mito-Tracker Green (Beyotime) at 37 °C for 15 min. After fixing with 4% paraformaldehyde, the cells were stained with 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI, 1 μg/mL, Beyotime) for 10 min, and observed with confocal microscope (LSM 880 with AiryScan, Carl Zeiss).
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3

Quantifying Mitochondrial Content in Myoblasts

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The measurement of mitochondrial content was conducted following the previous study (Iwabu et al., 2010 (link)). mtDNA content and Mito-Tracker Green probe staining were used to evaluate the content of mitochondria. DNA of myoblasts was extracted using the TIANamp Genomic DNA Kit (Tiangen, Beijing, China), and the procedures were according to the instructions, then RT-qPCR was used to obtain the copy number of mtDNA using the relative ratio of mitochondrial COX2 to nuclear 18S rRNA, and the primer sequences were shown in Supplementary Table S1.
The myoblasts were cultured in the 35 mm cell culture dishes, and after heat stress, the cells were incubated with 100 nm Mito-Tracker Green (Beyotime, Shanghai, China) at 37°C for 40 min, then PBS was used to wash the cells to remove the Mito-Tracker Green. Finally, the fresh cell culture solution preheated at 37°C was added to observe the mitochondria using the laser scanning confocal microscope.
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4

Cytotoxicity Evaluation of Cells under Hypoxia

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Fetal bovine serum (FBS) was purchased from AusGeneX (Molendinar, Australia, CAT NO. FBS500-S); DMEM basic (1X) was from Gibco Life Technologies (Shanghai, China); penicillin/streptomycin solution (100 U/mL and 100 mg/mL, respectively), 2′, 7′-dichlorodihydrofluorescein diacetate (DCFH-DA), and Cellular grade DMSO were from Beijing Solarbio Science & Technology Co., Ltd. (Beijing, China); 3-(4,5-dimethyl-1,3-thiazol-2-yl)-2,5-diphenyl-2H-tetrazol-3-ium bromide(MTT) was obtained from Biosharp Life Technology Co., Ltd. (Hefei, China); Hoechest 33342, Mito-Tracker Green, and Lyso-Tracker Green were from Beyotime Biotechnology Co., Ltd. (Shanghai, China). All cells were cultured in a CO2 incubator (Wiggens, WCI-180, Beijing, China). All the in vitro fluorescence images experiments were obtained by using an Olympus IX73 + DP73 inverted microscope and laser confocal microscope (Carl Zeiss LSM 900, Jena, Germany). Hypoxic condition was created by coverslips (Citoglas, Hong Kong, China) and a hypoxia chamber (Stemcell Technologies, Cat 27310, Kent, WA, USA). Cytotoxicity assay was performed using an LED light (F&V, Z96kit, Fuijan, China) as irradiation source.
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5

Mitochondrial Staining in Fixed Cells

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The treated cells were cultured on glass coverslips and fixed in 4% paraformaldehyde in PBS for 10 min, permeabilized in 0.1% Triton X-100 in PBS for 4 min, blocked with 1% BSA/PBS for 1 h, and then incubated with Mito-Tracker Green (Beyotime, Nanjing, China) for 1 h at room temperature. The cell nuclei were counterstained with Hoechst 33342, and images were acquired using a fluorescence microscope.
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6

Fluoride-Induced Mitochondrial Dysfunction

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A mitochondrial membrane potential assay kit with JC-1 was utilized to determine the ∆Ψm within fluoride-treated cells. The HL-7702 cells were incubated with 0, 0.1, 1.0, and 10 μg/L T-2 toxin for 24 h. After exposure, the cells were collected by trypsinization, re-centrifuged, and finally resuspended in complete DMEM at the concentration of 1 × 105 cells/mL. The cells were kept in the 5% CO2 incubator for 20 min after being mixed with the 1 mL JC-1 stain liquid. After washing, the cells were imaged by using a fluorescence microscope. Mitochondrial morphology was evaluated by staining with Mito-Tracker Green (Beyotime Biotechnology, Haimen, China). After 24 h treatment, the HL-7702 cells were washed and stained for 0.5 h with Mito-Tracker Green; then, the images were captured (Leica SP5, Leica Microsystems Inc., Wetzlar, Germany).
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7

Mitochondrial Superoxide Detection in Fibroblasts

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Mitochondrial superoxide in skin fibroblasts was detected with MitoSOX (5 μM, YEASEN, Shanghai, China) staining. MitoTracker Green (200 nM, Beyotime, Shanghai, China) was incubated for mitochondria colocation at 37°C for 20 min in the dark. The fluorescence was observed and photographed with a laser confocal microscope.
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8

Mitochondrial Dynamics in BMDMs

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BMDMs were incubated with Mito-Tracker Green (#C1048, Beyotime) at 37 °C for 30 min and then analyzed using flow cytometry. Mitochondrial DNA copy number was determined by real-time PCR using specific probes against CytB and Ppia.
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9

Intracellular ROS and Mitochondrial Superoxide Measurement

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BMDMs were seeded in 6-well plates and treated with the fluorescent dyes DCFH-DA (#S0033, Beyotime) and MitoSOX Red (#M36008, Invitrogen) to measure the intracellular ROS and mitochondrial superoxide levels, respectively. Mito-Tracker Green was used to detect mitochondrial content. BMDMs were incubated with Mito-Tracker Green (#C1048, Beyotime) at 37 °C for 30 min and then analyzed by flow cytometry, using the Accuri C6 (BD) and subsequent analysis was performed using CFlow Plus.
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10

Comprehensive Biochemical Reagents Database

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Biochemical reagents, antibodies, and plasmids were purchased from companies indicated as follows: N-acetyl-p-aminophenol (APAP, Weikeqi Biotech, Chengdu, China); MitoTracker-Green, JC-1, LysoTracker-Red, Hoechst 33342, and FITC-conjugated goat anti-rabbit IgG (Beyotime, Shanghai, China); TMRE (Solarbio, Beijing, China); cytochalasin B and colchicine (Meilun, Dalian, China); Calcein-AM (Genesion, Guangzhou, China); Mito-Tempo (Sigma, St Louis, MO); pLP-VSVG (Clontech, Mountain View, CA); polyclonal rabbit anti-proteasome 20S α5 and anti-calnexin antibodies (Biosynthesis, Lewisville, TX); alanine transaminase (ALT); and aspartate transaminase (AST), glutathione (GSH), and glutathione disulfide (GSSG) test kits (Nanjing Jiancheng Bioengineering Institute, Nanjing, China).
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