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6 protocols using 70 and 40 μm cell strainers

1

Lung Cell Isolation and Flow Cytometry

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Flow cytometry and cell sorting were carried out as we previously described [14 (link)]. In brief, lungs were isolated in Hank’s Balanced Salt Solution (HBSS, Gibco), minced into small pieces and incubated with 0.5% collagenase type IV in HBSS (Life Technologies) at 37 °C for 45 min. Lung homogenates were then passed through 70 and 40 μm cell strainers (BD Biosciences) to obtain single-cell suspensions. Cells were centrifuged at 4 °C at 1000 rpm for 5 min and then resuspended in MACS buffer and stained with anti-PDGFRα (APC-conjugated, 1:100), anti-EpCAM (APC-Cy7-conjugated, 1:100), anti-CD31 (Pacific Blue-conjugated, 1:100) and anti-CD45 (Pacific Blue-conjugated, 1:100) antibodies (all from Biolegend) for 20 min on ice in the dark. Then, cells were washed with MACS buffer. Flow cytometry and cell sorting were done using FACSAria III cell sorter (BD Biosciences).
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2

Isolation and Culture of Adipose-Derived Mesenchymal Stromal Cells

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Mesenchymal stromal cells were derived from lipo-aspirates obtained from consenting healthy donors with approval from the Mayo Clinic Institutional Review Board as previously described (Crespo-Diaz et al., 2011 (link); Mader et al., 2013 (link)). Fat tissue was enzymatically digested using 0.075% Type I collagenase (Worthington Biochemicals) for 1.5 h at 37°C. Adipocytes were separated from the stromal vascular fraction by low speed centrifugation (400 g for 5 min). The adipose supernatant was removed and the cell pellet was rinsed with PBS and passed through 70 and 40μm cell strainers (BD Biosciences). The resulting AMSC cell fraction was maintained in Advanced MEM Medium containing 5% PLTMax (a clinical grade commercial platelet lysate product [MillCreekLifeSciences]), 2 mM Glutamax (Invitrogen), 2 U/ml heparin (hospital pharmacy), 100 U/ml penicillin, and 100 μg/ml streptomycin (Cellgro) as described previously (Crespo-Diaz et al., 2011 (link)).
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3

Isolation and Culture of Primary Myoblasts

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Primary muscle cells were derived from hindlimb muscles of two-three month-old mice (two mice for each preparation) as described previously41 (link). Briefly, muscles were digested with 0.2% collagenase type-II (Sigma) in DMEM for 30 minutes at 37 °C, and then with 2 mg/ml Collagenase/Dispase (Roche Diagnostic) for 30 minutes at 37 °C. Satellite cells were mechanically dissociated by passing the tissue suspension through a 5 ml pipette; the slurry was sequentially filtered through 70 and 40 μm cell strainers (BD Biosciences) and centrifuged. Pelleted cells were resuspended in F-10 (Gibco) supplemented with 20% FBS, 2.5 ng/ml basis-FGF (Peprotech), and penicillin-streptomycin. The cell suspension was preplated for one hour on uncoated dishes to remove fibroblasts. The medium containing the enriched myoblast population was then plated on tissue culture dishes coated with type-I collagen (Sigma). After three days in culture, primary myoblasts were shifted to differentiation medium and harvested for RNA preparation after 72 hours.
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4

FACS Isolation of Mouse Skin Cells

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For all FACS experiments, we used a protocol that has previously been described46 (link). Briefly, mouse back and belly skin cells were isolated using trypsin digestion and filtered through 70 and 40 μm cell strainers (BD Biosciences) to obtain single-cell suspensions. Cells were labelled with α-CD34-Biotin (1:50, eBiosciences), α-Streptavidin-APC (1:100, BD Pharmingen) and α-α6-integrin (1:40, CD49f, BD Pharmingen). Propidium iodide (1:1,250–1:2,500 of 1 mg ml−1 stock, Sigma) was used to label the dead cells. BD FACSAria in the Flow Cytometry Core at Cornell University was used for cell sorting.
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5

Single-cell Isolation from Tumor Tissues

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Tumors and spleens were removed from mice or tissues from HCC patients, and single-cell suspensions were prepared by enzymatic digestion. Resected tumors were weighed, minced into small (1–2 mm3) pieces with a scalpel, and immersed in 10 mL of digestion mixture (5% FBS in RPMI 1640, 0.5 mg/ml collagenase A (Roche Diagnostic), 0.2 mg/ml hyaluronidase, type V (Sigma-Aldrich), and 0.02 mg/ml DNase I (Sigma-Aldrich)) per 0.25 g of tumor tissue. The resulting cell suspensions were filtered sequentially through 70- and 40-μm cell strainers (BD Falcon) and washed with 5% FBS in RPMI 1640. Red blood cells (RBC) were lysed by brief incubation in 0.15 M ammonium chloride solution, and cell debris was removed by centrifugation using a lymphocyte isolation sterile solution (Ficoll-PaqueTM PLUS) as recommended by the manufacturer (GE Healthcare Bio-Science AB).
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6

Isolation of Primary NSCLC Cells

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All patients were first diagnosed with primary NSCLC without other tumour occurrences. They did not receive any therapy before surgery. Samples were chopped into small pieces, and incubated in 1 mg ml−1 collagenase/dispase solution (Roche, Indianapolis, IN) with 0.001% DNAse (Sigma-Aldrich, St Louis, MO) and 2% antibiotics (Sigma) in a water bath at 37 °C for 3 h. After incubation, the suspensions were passed through 70- and 40-μm cell-strainers (BD Falcon, San Jose, CA) and centrifuged at 122g for 5 min at 4 °C. Cells were then resuspended in red blood cell lysis buffer (eBioscience, San Diego, CA) for 4 min at room temperature with intermittent shaking. The cell viability was evaluated by trypan blue dye exclusion. Live single cells accounted for 90% of the whole population.
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