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9 protocols using ab9635

1

Multiparameter Immunophenotyping of Cells

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CD4-VioGreen (130-106-655, Miltenyi Biotec), Anti-CCR10-PE (clone: REA326, 130-104-822, Miltenyi Biotec), CD183 (CXCR3)-PE-Vio770 (clone: REA326, 130-104-822, Miltenyi Biotec), CD194 (CCR4)-APC (clone: REA279, 130-103-813, Miltenyi Biotec), CD196 (CCR6)- PE-Vivo-615 (clone: REA190, 130-107-142, Miltenyi Biotec), Propidium iodide (130-093-233, Miltenyi Biotec), NESTIN rabbit-anti-mouse (ab7659, Abcam), SCA1 rat-anti-mouse (ab25195, Abcam), PDGFRα goat-anti-mouse (AF1062, R&D Systems), Alexa Flour 405 donkey-anti-Rabbit (ab175651, Abcam), Alexa Flour 488 donkey-anti-goat (A-11055, Thermo Fisher Scientific), Alexa Flour 594 donkey-anti-rat (A-21209, Thermo Fisher Scientific), PerCP-CyTM 5.5 CD45.2 conjugated mouse-anti-mouse (552950, BD Biosciences), ICAM1 rabbit-anti-human (ab53013, Abcam), VCAM1 rabbit-anti-human (ab134047, Abcam), IL-1β rabbit-anti-human (ab2105, Abcam), TNF-α rabbit-anti-human (ab9635, Abcam), actin rabbit-anti-human (A2066, Sigma-Aldrich), rabbit anti goat (81–1620, Invitrogen), goat anti rabbit (65–6120,Invitrogen), CD3 rabbit-anti mouse (AD452, Dako), and B220 rat-anti-mouse (MAB1217, R&D Systems).
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2

Osteoclast Differentiation Induced by rhGGT

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Bone marrow cells (BMCs) were isolated from C57BL mice and plated in 10cm dish for 2 d. 5x104 of non-adherent BMCs were distributed into 96 well-plate and incubated in the presence of 30ng/ml of mouse M-CSF (R&D system, MN, USA) for 2 d. The conditioned medium of ST2 cells stimulated for 2 d with 1μg/ml of hrGGT was added to adherent BMCs for 5 d. To investigate the effect of rhGGT induced TNF-α, neutralizing antibody of TNF-α (ab9635: abcam, MA, USA) was applied simultaneously with rhGGT. The medium was refreshed every 2 d. TRAP staining was performed to detect osteoclasts.
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3

Quantifying Protein Levels in HBEpCs

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The isolation of total proteins from HBEpCs was performed using RIPA solution (Sigma-Aldrich), followed by BCA assay to measure protein concentrations. All protein samples were incubated at 95 °C for 10 min to denature proteins, followed by separating protein samples (35 μg protein per lane) using 10% SDS-PAGE gel. PVDF membranes were used to transfer proteins and blocking in 5% non-fat milk (FBS) at room temperature for 2 h. After that, primary antibodies including rabbit anti-TNF-α (ab9635, Abcam) and GAPDH (ab9483, Abcam) were used to incubate with membranes at 4 °C for 12 h. After that, HRP Goat Anti-Rabbit (IgG) (ab6721, Abcam) secondary antibody was used to incubate with the membranes at room temperature for 2 h. Data normalization was performed using ImageJ v1.48.
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4

Quantifying TNF-α in Osteoclasts

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TNF-α in osteoclasts after CASC11 was detected by Western blot. Briefly, Monarch® Total RNA Miniprep Kit (NEB) was used to extract total RNAs from osteoclasts. Following denaturing, gel electrophoresis was performed using 10% SDS-PAGE. After gel transfer to PVDF membranes, membranes were blocked in 5% non-fat milk for 2 hrs at denaturing. Membranes were then incubated with rabbit anti-human TNF-α (1:1200, ab9635, Abcam) or GAPDH (1:1800, ab8245, Abcam) overnight at 4°C. After that, incubation with goat anti-rabbit IgG-HRP secondary antibody (1:1500, MBS435036, MyBioSource) was performed for 2 hrs at room temperature. After ECL (Sigma-Aldrich, USA) method was used for signal development and signals were normalized using Image J software.
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5

Cytokine and Signaling Protein Analysis

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Cells were subjected to radioimmunoprecipitation assay buffer to prepare lysate. Bicinchoninic acid assay was then used to determine the protein concentration. After resolving via 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, proteins were transferred to polyvinylidene difluoride membranes (0.45 µm), which were then blocked with 5% bovine serum albumin (BSA) in phosphate-buffered saline (PBS)-Tween20 (PBS-T) at 25 °C for 60 min and incubated at 4 °C for 12 h with the following immunoglobulins: rabbit anti-IL-1β (1:2000, ab2105, Abcam), anti-IL-6 (1:2000, ab7737, Abcam), anti-TNF-α (1:2000, ab9635, Abcam), mouse anti-SIRT1 (1:1000, ab110304, Abcam), anti-TLR4 (1:2000, ab22048, Abcam), anti-p-NFκB (1:500, ab86299, Abcam), anti-NFκB (1:2000, ab16502, Abcam), and anti-GAPDH (1:5000, ab8245, Abcam). Subsequently, the resulting membranes were incubated with horseradish peroxidase-connected secondary antibodies at 4 °C for another 60 min. Blots were observed through an chemiluminescence reaction via a blot scanner.
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6

Modulating hES Cell Barrier Function

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Gap 26 connexin mimetic peptide (150 μM) (VCTDKSFISHUR) (Tocris Biosciences #1950) was used to specifically inhibit connexin 43 gap junctions in the BeWo barrier and H9 cell colonies. Anti-TNF-α antibody (0.1 μg/mL) (Abcam #ab9635) was used to neutralise TNF- α in conditioned cell culture medium. Recombinant human TNF-α (50 ng/mL) (Gibco #PHC3015) was added directly to hES cell cultures.
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7

Quantification of GAPDH and TNF-α Protein Levels

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Phosphate-buffered saline was used to wash AC16 cells twice. Then, 105 AC16 cells were mixed with 1 mL of radioimmunoprecipitation assay (RIPA) solution (Sigma-Aldrich) to prepare cell lysates. Protein concentrations were measured using the bicinchoninic acid (BCA) assay (Sigma-Aldrich), followed by protein denaturation in boiling water for 10 minutes. Protein molecules were separated using a 10% sodium dodecyl sulfate-PAGE gel, followed by gel transfer to polyvinylidene difluoride membranes. Blocking was performed using PBS containing 5% nonfat milk for 2 hours at room temperature. After that, membranes were first incubated with rabbit primary antibodies to GAPDH (ab9845, Abcam, Cambridge, UK) and TNF-α (ab9635, Abcam) for 12 hours at 4°C. Then, membranes were further incubated with secondary antibodies of horseradish peroxidase (HRP)-conjugated goat anti-rabbit (IgG; ab6721, Abcam) for 2 hours at room temperature. Signals were then produced using ECL chemiluminescence kit (Pierce Biotechnology, Rockford, IL, USA), and ImageJ v1.48 software (National Institutes of Health, Bethesda, MD, USA) was used to normalize signals.
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8

Immunohistochemistry Protocol for Tissue Staining

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Immunohistochemistry was performed as described previously [25] (link), [26] (link), [27] (link). For immunohistochemistry experiments, frozen 8-μm-thick sections were fixed in 4% paraformaldehyde. The sections were blocked by 8% normal goat serum for 4 h and then incubated in specific primary antibodies. After being washed three times by PBS, the sections were incubated with horseradish peroxidase-conjugated secondary antibodies. Staining is visualized using substrate diaminobenzidine. The following antibodies were used: α-smooth muscle actin (α−SMA, #ab7817, Abcam, Cambridge, UK, 1: 600 dilution), PCNA (clone PC10, Millipore, Milford, MA, USA, 1;1000 dilution), tumor necrosis factor-α (TNF-α, #ab9635, Abcam, Cambridge, UK, 1: 1000 dilution), interleukin-1β (IL-1β, #MAB4012, R&D Systems, Minneapolis, MN, USA, 1: 1000 dilution), CD68 (#MA5-13324, Invitrogen, Carlsbad, CA, USA, 1: 2000 dilution), 3-nitrotyrosine (3-NT, #sc-32757, 1: 4000 dilution) malondialdehyde (MDA, #ab6463, 1: 2000 dilution), myeloperoxidase (MPO, #PA5-16672, Invitrogen, 1: 2500 dilution), chemokine (C-C motif) ligand 2 (CCL2, #MA5-17040, Invitrogen, 1: 1500 dilution) and chemokine (CXC motif) ligand 2 (CXCL2, #PA5-28820, Invitrogen, 1: 2000 dilution).
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9

Western Blot Analysis of TNF-alpha and GAPDH

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KGN cells were subjected to protein isolation, followed by BCA assay (Sigma-Aldrich) to measure protein concentrations. Protein samples were incubated in boiling water for 10 min to achieve protein denaturation. Denatured protein samples were separated using 8% SDS-PAGE gel, followed by gel transfer. Blocking was then performed, and membranes were first incubated with TNF-α (ab9635, Abcam) and GAPDH (ab9485, Abcam) rabbit primary antibodies at 4°C for 12 h. After that, membranes were further incubated with anti-rabbit IgG-HRP secondary antibody (ab6721, Abcam) at room temperature for 2 h. Signals were produced using ECL reagent (Sigma-Aldrich). Signals were normalized using Image J v.146 software.
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