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7 protocols using amersham imagequant 800 system

1

Western Blot Analysis of Protein Samples

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Protein samples were mixed with an equal amount of 2× Laemmli reducing buffer and boiled for 10 min before being subjected to SDS-PAGE analysis on 12% polyacrylamide gels. Proteins were stained with InstantBlue solution (Expedeon) for visualization or were transferred onto PVDF membranes using iBlot Dry Blotting System (Thermo Fisher Scientific) at 20 V for 7 min. Following protein transfer, the PVDF membranes were immediately blocked with 1× casein blocking buffer (Sigma-Aldrich) and were probed with either horseradish peroxidase (HRP)-conjugated primary antibodies against His tag (Qiagen) or with rabbit primary antibodies against HA-tag (Sigma-Aldrich) followed by anti-rabbit HRP-conjugated secondary antibodies. Membranes were thoroughly rinsed with PBS containing 0.1% Tween 20 between the incubations. Chemiluminescent signals were detected using Amersham ImageQuant 800 System (GE Healthcare) after a brief incubation of the PVDF membranes with Immobilon Forte Western Chemiluminescent HRP Substrates (EMD Millipore). For reblotting with a different antibody after image acquisition, the membranes were incubated with Restore PLUS Western Blot Stripping Buffer (Thermo Fisher Scientific) for 30 min at room temperature, rinsed thoroughly before being blocked with casein blocking buffer, and probed with antibodies as described above.
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2

Glioblastoma Protein Extraction and Analysis

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The RIPA protein extraction method (Beyotime, Shanghai, China) was used to extract total protein from glioblastoma cells. Following centrifugation, the protein concentration was determined with the BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). For protein separation, SDS-polyacrylamide gel electrophoresis (SDS-PAGE) was employed, and PVDF membrane was utilized for protein transfer. After incubating the membrane overnight at 4°C with the specified antibodies, it was washed three times with TBST. Subsequently, the membrane was incubated with LAPTM4A-conjugated secondary antibodies at room temperature for the next hour. Finally, protein expression was detected using the Amersham™ Image Quant 800 system (GE Healthcare, Chicago, IL, USA).
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3

Cytosolic Fractionation and Immunoblotting

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Cytosolic fractionations for detection AIF and Cytochrome c were prepared in digitonin extraction buffer (0.015% digitonin, 300 mM sucrose, 10 mM PIPES, 3 mM MgCl2, 100 mM NaCl, 5 mM EDTA) supplemented with 1 mM phenylmetnylsulfonyl fluoride (PMSF). The whole-cell lysates were prepared in RIPA buffer (1× PBS, 0.5% sodium deoxycholate, 1% NP-40, and 0.1% sodium dodecyl sulfate (SDS)) containing 10 mM NaF, 10 mM β-glycerophosphate, 1 mM PMSF and protease inhibitor cocktail (Roche, Indianapolis, IN). Protein concentrations were detected with the Pierce BCA Protein Assay Kit (#23222, Thermo Scientific) according to the manufacturer’s instructions. Thirty μg of total proteins were separated by using SDS–polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes. After incubation with 5% dried skimmed milk, the NC membranes were incubated with the indicated primary antibodies at 4 °C overnight and then treated with the corresponding HRP-linked secondary antibodies at room temperature for 2 h. The protein bands were developed by using enhanced chemiluminescence (ECL) detection reagent (Beyotime, Shanghai, China) and then scanned using the Amersham ImageQuant 800 system (GE Healthcare, Piscataway, USA).
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4

Protein Extraction and Western Blot Analysis

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We utilized radioimmunoprecipitation assay buffer (RIPA) with the addition of protease inhibitor cocktail (Roche, Switzerland) to extract total proteins and quantified using the BCA method. Protein was separated on SDS-PAGE gels and transferred to PVDF membranes (EMD Millipore, Billerica, MA, USA). After overnight incubation at 4° C with the designated antibodies, the membrane was subjected to three washes with TBST. The membrane was then exposed to secondary antibodies at room temperature for one hour. Detection of protein expression was conducted using the Amersham™ ImageQuant 800 system (GE Healthcare, USA).
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5

Protein Extraction and Western Blot Analysis

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Total proteins were extracted from cells using RIPA buffer and protease inhibitor cocktail tablets (Roche), followed by incubation on ice 30 min and centrifugation at 12,000 rpm for 12 min at 4 °C. A protease/phosphatase inhibitor (4906845001, Roche, USA) was included in all experiments aimed at investigating protein phosphorylation. Protein concentrations were determined using a BCA Protein Assay Kit (Beyotime Biotechnology, China). Subsequently, 30-40 µg of protein was loaded onto gels. The proteins were transferred to polyvinylidene difluoride membranes (Bio-Rad) using a Bio-Rad wet transfer system. The membranes were blocked in 5% skim milk or BSA for 1 h at room temperature. They were incubated with primary antibodies diluted in universal antibody diluent (WB500D, NCM Biotech) at 4 °C. The next day, the membranes were cleaned and exposed to horseradish peroxidase-conjugated secondary antibodies (CST, USA), then washed and treated with Western Lightning (P90720, MILLIPORE). The blots were visualized using the Amersham ImageQuant 800 system (GE, USA) following to the manufacturer's instructions.
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6

Protein Extraction and Immunoblotting

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Cells were lysed in an ice-cold lysis buffer (1% NP-40, 25 mM HEPES at pH 7.5, 10% glycerol, 0.25% sodium deoxycholate, 1 mM EDTA, 1 mM Na3VO4, 25 mM NaF, 150 mM NaCl, 10 mg/mL aprotinin, 10 mg/mL leupeptin, and 250 mM phenylmethanesulfonyl fluoride). For immunoblotting (IB), the samples (50–80 μg of total protein per sample) were run on sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene fluoride membranes. Then, membranes were incubated with primary antibodies at 4 °C overnight. The primary antibodies used are shown in Table 1. After incubation with appropriate horseradish peroxidase-conjugated secondary antibodies, an Immobilon Western Chemiluminescent HRP Substrate (WBKLS0500, Millipore, Billerica, MA, USA) was used to visualize the protein bands, and the images were captured using an AmershamTM ImageQuantTM 800 system (GE Healthcare Life Sciences, Marlborough, MA, USA).
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7

Immunoblotting and Co-Immunoprecipitation Assay

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Cells were lysed in lysis buffer [5 mM HEPES (pH 7.5), 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholate, 10% glycerol, 25 mM NaF, 1 mM EDTA, 1 mM Na3VO4, 250 μM PMSF, 10 μg/mL leupeptin, and 10 μg/mL aprotinin]. The whole-cell lysates were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA). The membranes were blocked in 5% skim milk, and then incubated in primary antibodies overnight at 4 °C. After washing with TBS–T [10 mM Tris–HCl (pH 7.4), 100 mM NaCl, and 0.1% (v/v) Tween 20], the membranes were incubated with horseradish peroxidase-conjugated (HPR) secondary antibodies for 1 h and visualized using Immobilon Western Chemiluminescent HRP Substrate (WBKLS0500, Millipore). Signals were detected and analyzed by the AmershamTM ImageQuantTM 800 system (GE Healthcare Life Sciences, Marlborough, MA, USA). For IP, HEK 293 cells were transfected with the indicated combinations of Myc-USP17, and HA-Osx. The whole cell lysates were collected by lysis buffer and incubated with appropriate antibodies and Protein A Sepharose CL-4B (#17096303; GE Healthcare Life Sciences). The protein–protein complex was eluted by heating at 100 °C, and then, detected by IB.
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