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14 protocols using p stat2

1

Protein Analysis via Western Blotting

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For protein analyses the cells from different blood donors were pooled to get sufficient amounts of proteins, and whole cell lysates were prepared in the passive lysis buffer of Dual Luciferase Assay Kit (Promega) containing 10 mM Na3PO4. Equal amounts of proteins (10–30 ug/lane) were separated on SDS-PAGE and transferred to Hybond-P polyvinylidene difluoride (PVDF) membranes (Amersham Biosciences). The membranes were blocked with 5% milk protein in PBS. Antibodies against IRF3 and MxA were as previously described21 (link),22 (link) and antibodies against ZIKV NS5 were prepared as described above. The staining was done in blocking buffer at RT for 1 h. Antibodies against phosphorylated IRF3 (P-IRF3, #4947), STAT2 (#72604), P-STAT2 (#88410) and GAPDH (#2118) were from Cell Signaling Technology, for β-Actin (SC-10731) from SantaCruz Biotechnology, and the stainings were done in Tris-buffered saline, pH 7.4 containing 5% BSA at +4 °C overnight. HRP-conjugated antibodies (Dako) were used in the secondary staining at RT for 1 h. Protein bands were visualized on HyperMax films using an ECL plus system (GE Healthcare).
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2

Western Blot Analysis of Immune Signaling

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Total protein was isolated from cells or tissue samples using RIPA lysis buffer. The protein concentration was determined using the Bradford assay. Equal amounts of total protein were separated by SDS-PAGE electrophoresis, transferred to PVDF membranes, and blocked with 5% skim milk powder at room temperature for 1 h. Next, the PVDF membranes were washed with TBST containing NaCl, Tris-HCl, and Tween-20 and incubated with primary antibodies against target proteins at 4 °C overnight, followed by two washes with TBST. TMEM2 antibody was purchased from Aviva Systems Biology. Antibodies against p-Tyk2, Tyk2, p-JAK, JAK, p-STAT1, STAT1, p-STAT2, STAT2, IRF9, and GAPDH were obtained from Cell Signaling Technology. PVDF membranes were incubated with the appropriate secondary antibodies at room temperature for 1 h and washed three times with TBST. Protein bands were visualized by chemiluminescence (ECL, Forevergen, Guangzhou, China).
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3

Western Blot Analysis of IFN Signaling

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DB and OCI-ly10 were isolated and lysed in lysis buffer (200 μl) (Sigma Aldrich, Shanghai, China). Protein lysates (10 μg) were electrophoresed on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (BioRad, Hercules, CA, USA). Membranes were blocked for non-specific binding using 5% non-fat dried milk and left overnight at 4 °C rocking at low speed with IFNAR1 (ab45172, Abcam), IFNAR2 (ab190664, Abcam), p-STAT1 (9167, Cell Signaling Technology), STAT1 (14994 Cell Signaling Technology), p-STAT2 (4108, Cell Signaling Technology), STAT2 (72604, Cell Signaling Technology), p-STAT3 (9145, Cell Signaling Technology), STAT3 (9139, Cell Signaling Technology), OX40L (ab264466, Abcam), LC3A/B (4108, Cell Signaling Technology), p62 (88588, Cell Signaling Technology), and β-actin primary antibody (3700, Cell Signaling Technology). Horseradish peroxidase conjucated antibody was used as secondary detection. Immunocomplexes were visualized with an enhanced chemiluminescence detection kit.
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4

Protein Expression Analysis in Huh-7.5 Cells

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Western blotting was performed using a standard protocol established in our laboratory. Infected Huh-7.5 cells were washed twice with PBS and then lysed in ice-cold RIPA buffer. Total protein content of the extract was quantified using a Bio-Rad protein assay kit (Bio-Rad, Hercules, CA). Equal amounts of proteins were loaded on SDS-PAGE gels and Western blotting was carried out using antibodies to STAT1, p-STAT1, STAT2, p-STAT2, HSC70, β-actin and GAPDH (Cell Signaling Danvers, MA); as well as LAMP2A (Abcam).
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5

Cytokine Signaling Pathway Analysis

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PBMCs or mouse skin tissues were harvested and lysed in RIPA (Beyotime Institute of Biotechnology) buffer with protease inhibitor cocktail (Bimake) and phosphatase inhibitor cocktail (Bimake). p‐JAK2 (Cell Signaling Technology, Cat# 3771, RRID: AB_330403), JAK2 (Cell Signaling Technology, Cat# 3230, RRID: AB_2128522), p‐STAT2 (Cell Signaling Technology, Cat# 88410, RRID: AB_2800123), STAT2 (Cell Signaling Technology, Cat# 72604, RRID: AB_2799824), TNF‐α (Abcam, Cat# ab1793, RRID: AB_302615), IFN‐γ (Abcam, Cat# ab9657, RRID: AB_2123314), IL‐1β (Abcam, Cat# ab9722, RRID: AB_308765), IL‐17 (Abcam, Cat# ab79056, RRID: AB_1603584), IL‐23 (Abcam, Cat# ab45420, RRID: AB_2124515), β‐actin (Servicebio, Cat# GB11001, RRID: AB_2801259), and GAPDH antibody (Arigo, Cat# ARG10112, RRID: AB_2885012) were used for Western blotting. The Immuno‐related procedures used comply with the recommendations made by the British Journal of Pharmacology (Alexander et al., 2018 (link)).
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6

Quantification of IFNβ Signaling Pathway

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Anti-IFNβ neutralizing antibodies and the corresponding isotype control antibodies (goat IgG control) were purchased from R&D Systems (Minneapolis, MN, USA). Recombinant human IFNβ1a (rhIFNβ1a) was purchased from PBL Assay Science (Piscataway, NJ, USA). Antibodies for STAT1, p-STAT1, STAT-2, and p-STAT2 were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Fluorescein isothiocyanate (FITC)-conjugated anti-human IFNAR1 antibodies and matched isotype antibodies were from Clinisciences (Nanterre, France). FITC-conjugated anti-IFNAR2 antibodies and isotype antibodies were purchased from Sino Biological Inc. (Beijing, China). Anti-influenza NS1 and anti-β actin antibodies were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA.
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7

Comprehensive JAK/STAT Pathway Analysis

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Western blots were performed using standard techniques with 1:1000 dilutions of antibodies from Cell Signaling Technology (CST; Danvers, MA): FLAG (#14793), β-actin (#4970), GAPDH (#2118), JAK1 (#3344), p-JAK1 (Y1034/1035) (#74129), JAK2 (#3230), p-JAK2 (Y1008) (#8082), JAK3 (#8827), p-JAK3 (Y980/981) (#5031), TYK2 (#14193), p-TYK2 (Y1054/1055) (#68790), STAT1 (#14994), p-STAT1 (Tyr 701) (#7649), STAT2 (#72604), p-STAT2 (Tyr690) (#4441), STAT3 (#30835), p-STAT3 (Tyr705) (#9145), STAT4 (#2653), p-STAT4 (Tyr693) (#4134), STAT5 (#94205), p-STAT5 (Tyr694) (#4322), STAT6 (#5397), and p-STAT6 (Tyr641) (#9361). Antibodies from Sigma (St. Louis, MO) included SOCS5 (WH0009655M1) (Dilution 1:1000), and Vinculin (#V9131) (Dilution 1:1000). Blots were developed using chemiluminescence (BioRad, Hercules, CA). All blots derive from the same experiment and were processed in parallel.
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8

Characterization of Recombinant H1N1 Influenza Virus

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The A/swine/Shanghai/3/2014 (H1N1) strain was isolated in our laboratory from pigs with clinical symptoms of swine influenza. Recombinant SH/2014 (rSH/2014) and rSH/2014 NS1 S42P (NS1 mutant of SH/2014) were constructed and rescued as described in a previous study (Cheng et al., 2018 ). A549 cells, MDCK cells and 293T cells were obtained from ATCC (Manassas, VA, USA) and maintained in DMEM (Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS) (Invitrogen, Carlsbad, CA, USA) at 37°C with 5% CO2. Antibodies against RIG-I, p-IRF3, p-STAT1, p-STAT2, K63-linked ubiquitin and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-HA and anti-Flag antibodies were purchased from Sigma-Aldrich (St Louis, MO, USA). Antibodies against IAV NS1 and NP protein were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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9

Investigating Type I Interferon Signaling

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HEK293T (ATCC) or Vero (ATCC) cells were grown in Dulbecco’s modified Eagle’s medium (Gibco) supplemented with 10% fetal bovine serum (Gibco) and 1% penicillin/streptomycin (Sigma). Cells were grown at 37°C in a humidified 5% CO2 atmosphere. Plasmid pISRE-luc was a kind gift of Prof Ian Goodfellow (University of Cambridge, UK). Plasmid for FLAG-VP24 was kindly given by Marco Sgarbanti (Istituto Superiore di Sanità, Italy). pRL-TK was purchased from Promega. T-Pro P-Fect Transfection Reagent was from T-Pro Biotechnology. Human Recombinant IFN-α was purchased from Thermo Fisher Scientific. Mouse monoclonal anti-FLAG M2 was obtained from Sigma. Rabbit antibodies against P-STAT1, P-STAT2, P-JAK1, P-TYK2, STAT2, GAPDH and the anti-rabbit HRP-linked IgG were purchased from Cell Signaling. Rabbit anti-STAT1, anti-mouse HRP-linked IgG, goat anti-mouse IgG Alexa Fluor 488, goat anti-rabbit IgG Alexa Fluor 594 and Pierce ECL Western Blotting Substrate were from Thermo Fischer Scientific.
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10

Protein Isolation and Western Blot Analysis

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Total protein was isolated from cultured cells using Pierce RIPA buffer (ThermoFisher # 89900) and run on precast gel
(Bio-Rad # 456-1094S). The membrane was blocked and then probed by a primary antibody (IFN-κ, Abnova, Catalog #:
H00056832-M01; Tyk2, Cell Signaling # 9312s; STAT1, Cell Signaling # 9172; STAT2, Cell Signaling # 4594; pSTAT1, Cell Signaling #
9167; pSTAT2, Cell Signaling # 4441; β-Actin, sigma # A5441), followed by a secondary antibody (anti-mouse IgG, AP-linked
Antibody, Cell Signaling # 7056S), then washed 5 times, and substrate added (Fisher Scientific # 45-000-947). Membrane was scanned
on Molecular Dynamics STORM 860 PhosphorImager (GE Health Care, STORM 860).
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