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6 protocols using prolong gold antifade mountant reagent

1

Immunofluorescence Analysis of Nrf2 and p65

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ASM cells were plated on cover slips in 12-well plate. After grown to confluence, cells were treated with 300 μM Sul-121, with or without 15% CSE or 10 μg/ml LPS (Sigma, L-2880), for 2 hours. Cells were then fixed with a solution containing 4% paraformaldehyde and 4% sucrose for 15 min at room temperature, followed by treatment with 0.3% Triton X-100 for 5 min at room temperature. Cells were blocked for 1 hour at room temperature with PBS containing 5% bovine serum albumin and 2% donkey serum. Cells were then incubated overnight at 4 °C with primary antibodies against Nrf2 (Abcam, ab31163, 1:100) and p65 (Cell Signaling, #3033S, 1:20). The next day, cells were washed with PBS and incubated with secondary antibodies (1:500) for 1 hour at room temperature. After wash with PBS, nuclei were stained with Hoechst (Invitrogen, H3570, 1:10000) for 5–10 sec, immediately followed by two quick and four 10 min washing steps with ultra-pure water. After staining, coverslips were mounted using ProLong® Gold Antifade Mountant reagent (Life Technologies, P36930) and imaged using an Olympus AX70 microscope equipped with digital image capture system (ColorView Soft System with Olympus U CMAD2 lens, Olympus Corporation, Tokyo, Japan). The background corrected fluorescence measurements were performed with Image J 1.48v58 (link). Data represent from 4–5 experiments.
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2

Quantification of p-NF-κB in BV2 Cells

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BV2 cells (5 × 105 cells) were seeded on sterile coverslips and pretreated with 20 μM ISO for 1 h and added with 20 μM Aβ25–35 for 24 h. After washing with PBS three times, the cells were fixed in 4% paraformaldehyde for 10 min at room temperature. After washing with PBS three times, cells on coverslips were permeabilized in 0.2% (v/v) Triton X-100 for 5 min at room temperature. Cells were washed again with PBS, the coverslips were blocked with PBS containing 5% BSA for 5 min and incubated with an antibody against p-NF-κB (sc-166748, Santa Cruz Biotechnology, Santa Cruz, CA, USA) diluted with PBS containing 5% BSA (1:500) for 1 h at room temperature. After washing with PBS three times, the coverslips were incubated with a secondary antibody Alexa Flour 488 (1:500, Invitrogen, Carlsbad, CA, USA) for 30 min and counterstained for nuclei with Hoechst 33,342 for 10 min. After washing with PBS three times, the coverslips were mounted using Prolong Gold antifade Mountant reagent (Life Technologies, Carlsbad, CA, USA). Each coverslip was analyzed on the Nikon Eclipse Ti fluorescence microscope (Nikon Instruments Inc., New York, NY, USA).
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3

Isolation and Staining of Tumor Cells

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A tissue cut of up to 10 mg from tumour samples was subjected to gentle pipetation with 1 ml pipete, in order to separate the cells. Tumour and CSF samples were centrifuged at 600 × g for 7 min. The supernatant fluid was gently removed, and 500 μl of PBS solution were added to the sediment cells. These steps were then repeated. After the second centrifuge, the supernatant fluid was gently removed, and 10 μl of a solution containing methanol and acetic acid (3:2) were added to the cells, followed by rapid transfer of 20 μl of the cells to the center of a slide. After 7 min, the slide was transferred through an ethanol gradient (70%, 85%, 100% for 2 min each). Two drops of NucBlue® Fixed Cell Stain ReadyProbes® Reagent (Thermo Fisher Scientific, Waltham, MA, catalog no. R37606) were diluted in 1 ml phosphate-buffered saline, and 200 μl of this 4′,6-diamidino-2-phenylindole (DAPI) solution were added to the slide. After 5 min, unincorporated DAPI solution was removed, and 10 μl of ProLong® Gold Antifade Mountant Reagent (Thermo Fisher Scientific, catalog no. P36930) were added.
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4

Immunofluorescence Staining of Ki-67 and Tubulin

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The coverslips were fixed in 4% formaldehyde solution and blocked with blocking buffer (4% FCS, 0.3% Triton X-100 in phosphate-buffered saline) at 4°C overnight. Afterwards slides were washed in phosphate-buffered saline (3 x 5min) and incubated with primary antibodies overnight at +4°C in a humidified chamber. Primary antibody solution contained 0.01g/ml BSA and 0.03% Triton X-100 in PBS as well as Ki-67 (1:50, mouse, Santa Cruz Biotechnology, Inc.) and alpha-tubulin (1:250, rabbit, Abcam, Cambridge, UK). After one more washing step the coverslips were incubated at room temperature in a humidified chamber with secondary antibodies goat anti-Mouse-Alexa 488 (1:400, A11001, Life Technologies) and goat anti-Rabbit-Alexa 647 (1:200, goat, Life Technologies) for 90 min. Coverslips were washed and dried and mounted on glass slides using ProLong Gold Antifade Mountant reagent (Thermofisher Scientific). The mounting medium contained DAPI for nuclear fluorescence staining.
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5

Quantifying DNA Damage Response

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Cells were seeded on a coverslip in a 35 mm φ dish and incubated overnight. Ten nM CB839 was administered immediately after X-irradiation, and the cells were incubated for 0.5, 1, 2, 6, or 24 h. Cells were fixed with 4% paraformaldehyde in PBS for 10 min. Cells were permeabilized with PBS containing 0.3% Triton-X, and then washed three times with 1 mL of PBS. Non-specific antibody binding was blocked with PBS containing 6% bovine serum albumin (BSA) for 60 min at room temperature. The blocked cells were incubated overnight with an anti-γH2AX antibody (1:1,000) or anti-53BP1 antibody in PBS containing 1% BSA and 0.3% Triton-X at 4 °C. Next, the cells were incubated for 1.5 h in the dark with an Alexa Fluor® 488 anti-rabbit antibody (1:1,000) in PBS containing 1% BSA and 0.3% Triton-X at room temperature. After incubation, the cells were washed three times with PBS and counterstained with 300 nM DAPI for 5 min at room temperature. The coverslips were mounted with ProLong® Gold Antifade Mountant reagent (Thermo Fisher Scientific). Fluorescence microscopic analysis was performed using an Olympus BX61 microscope (Olympus, Tokyo, Japan). The number of γH2AX foci or 53BP1 foci per cell was counted. At least 100 cells were analyzed.
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6

Quantifying DNA Damage Foci Formation

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Analyses of mitotic catastrophe (MC) and centrosome numbers were performed as previously described [26] (link), [27] (link). For the 53BP1/γ-H2AX foci formation assay, cells were seeded on glass coverslips coated with collagen (Cellmatrix Type I-C; Nitta Gelatin; Osaka, Japan) and cultured overnight. Cells were fixed using 3.7% paraformaldehyde/PBS for 20 min at 4°C and permeablized with PBS containing 0.5% Triton X-100 for 5 min at 4°C. Cells were incubated with PBS containing 6% (v/v) goat serum (Chemicon International; Temecula, CA, USA) for 1 h at room temperature (RT). Next, cells were incubated with anti-53BP1 antibody (1:2000 dilution) or anti-γ-H2AX antibody (1:1000 dilution) in 3% (v/v) goat serum/PBS overnight at 4°C. They were next incubated with Alexa Fluor® 488 anti-rabbit IgG away from light (1:2000 dilution) in 3% (v/v) goat serum/PBS for 1.5 h, followed by DAPI staining. Coverslips were mounted with ProLong® Gold Antifade Mountant reagent (Thermo Fisher Scientific). Fluorescent microscopic analysis was performed using an Olympus BX61 microscope (Olympus; Tokyo, Japan) using reflected light fluorescence. At least 100 cells were analyzed and the average number of the foci per cell was determined.
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