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23 protocols using ab62484

1

Western Blot Analysis of Apoptosis and Autophagy Markers

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HUVECs were lyzed using RIPA lysis buffer (Beyotime, Shanghai, China) and cell supernatants were collected by centrifugation. The protein concentration was determined using BCA Protein Assay Kit (Beyotime, Shanghai, China). Protein samples were isolated by SDS-PAGE and transferred to PVDF membranes. After blocking with 5% BSA, membranes were incubated with primary antibodies against Bcl-2 (Abcam, ab32124, 1:1000), Bax (Abcam, ab243140, 1:500), Cleaved caspase-3 (Abcam, ab2302, 1:500), Caspase-3 (Abcam, ab184787, 1:2000), Beclin-1 (Abcam, ab207612, 1:2000), Atg5 (Abcam, ab108327, 1:10,000), p62 (Abcam, ab207305, 1:1000), GRP78 (Abcam, ab108615, 1:10,000), CHOP (Abcam, ab11419, 1:1000), Caspase-12 (Abcam, ab62484, 1:2000), XBP-1 (Abcam, ab220783, 1:1000) and GAPDH (Abcam, ab32124, 1:1000) overnight at 4°C. Membranes were washed in TBST, followed by incubation with secondary antibodies (Abcam, ab205718, 1:50,000; Abcam, ab205719, 1:20,000) for 1 h at room temperature. Protein bots were visualized using an enhanced chemiluminescence (ECL) detection kit (Beyotime, Shanghai, China).
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2

Immunoblotting of ER Stress Markers

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The following rabbit primary antibodies were diluted 1:1000 for immunoblotting: monoclonal antibody to phospho-PERK (MA5-15033) and polyclonal antibody to pIRE1α (PA1-16927) (Thermo Fisher), polyclonal antibodies to ATF6 (ab62576), caspase 12 (ab62484) and Sigma-1R (ab151288) (ABCAM, Cambridge, MA, USA), and combined with HRP-conjugated secondary antibodies diluted 1:500 (Santa Cruz Biotechnology Inc., Dallas, TX, USA).
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3

Western Blot Analysis of Protein Expression

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Total proteins were lysed in RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China), and the concentration of the protein samples was measured using a bicinchoninic acid (BCA) protein assay kit (Beyotime). Proteins were subjected to SDS-PAGE and then electrophoretically transferred onto PVDF membranes. Membranes were incubated with primary antibodies overnight at 4°C after blocking in 5% nonfat milk in TBST buffer, which was then coincubated with horseradish peroxidase (HRP)-conjugated anti-mouse/anti-rabbit IgG (Thermo Fisher Scientific). Proteins were visualized using a detection system of enhanced chemiluminescence (ECL), and the bands were analyzed using BandScan ImageJ software. The primary antibodies used in this study were as follows: anti-CHOP (diluted 1 : 1000, ab11419, Abcam), anti-caspase 12 (diluted 1 : 1,000, ab62484, Abcam), anti-GRP78 (diluted 1 : 100, ab21685, Abcam), anti-NLRP3 (diluted 1 : 500, ab214185, Abcam), anti-ASC (diluted 1 : 1000, ab155970, Abcam), anti-pro-IL-1β (diluted 1 : 500, ab2105, Abcam), anti-IL-1β (diluted 1 : 1500, ab9722, Abcam), anti-p-NF-κB (p-p65) (diluted 1 : 2000, ab86299, Abcam), anti-NF-kB p65 (diluted 1 : 300, ab19870, Abcam), anti-TLR4 (diluted 1 : 500, ab13556, Abcam), anti-MyD88 (diluted 1 : 1000, ab133739, Abcam), and anti-β-actin (diluted 1 : 1000, ab8226, Abcam). β-Actin was used as an internal control.
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4

Metatarsal culture and apoptosis signaling

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Metatarsals were isolated from 8 newborn C57BL/6J mice and cultured in DMEM (Gibco) containing 1% heat-inactivated fetal calf serum (Invitrogen) and 100 U/ml penicillin-strep tomycin in the presence of BMP2 (300 ng/ml) and siPERK, siATF4, or siPERK + siATF4 for 5 days, followed by histological examination. Affinity-purified anti-caspase-3 (ab32351; Abcam), caspase-12 (ab62484; Abcam), anti-CHOP (ab11419; Abcam) and anti-p-JNK (sc-293138; Santa Cruz Biotechnology, Inc.) were diluted at 1:100 and sections were incubated at room temperature for 2 h. For detection, biotinylated secondary antibody (sc-2364) and HRP-streptavidin complex (sc-2363) (Santa Cruz Biotechnology, Inc.) were used. A total of 0.5 mg/ml 3,3′-diami-nobenzidine (DAB) in 50 mM Tris-HCl substrate (Sigma) was used for visualization, and the sections were counterstained with Mayer's hematoxylin (H9627; Sigma).
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5

Pancreas Tissue Immunohistochemistry and Immunofluorescence

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Pancreas tissues were separated, fixed, and embedded in paraffin [21 (link)]. Serial sections were deparaffinized with dimethylbenzene, and antigen retrieval was conducted using citrate buffer solution. The slides were incubated with 3% hydrogen peroxide for 15 min and then blocked with 10% goat serum for 1 hour at room temperature. The slides were incubated with primary antibodies targeting Ngn3 (AVIVA SYSTEMS BIOLOGY, OAAB15617), cleaved Notch1 (Abcam, ab8925), insulin (Abcam, ab7842), NKX6-1 (Cell Signaling Technology, #54551), glucagon (Sigma, G2654), PDX-1 (Abcam, ab47267), Ki67 (Abcam, ab15580), and caspase12 (Abcam, ab62484) at 4°C in a refrigerator overnight. For immunohistochemistry, the GTVision™+ Detection System/Mo&Rb (Gene Tech, GK6005) was used to examine the signal based on the guidelines. For immunofluorescence staining, the signal was detected using FITC-labelled IgG fluorescence.
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6

Dissecting Apoptosis and ER Stress Pathways

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Anti-HDAC6 (sc11420, Santa Cruz), anti- acetyl-histone H3 (9649, Cell Signaling Technology), anti-BAX (ab32503, Abcam), anti-Bcl-2 (ab3214, Abcam), anti-cleaved caspase-3 (9664, Cell Signaling Technology), anti-phospho-JNK (4668, Cell Signaling Technology), anti-JNK (ab208035, Abcam), anti-phospho-eIF2α (3398, Cell Signaling Technology), anti-eIF2α (5324, Cell Signaling Technology),anti-phospho-PERK (sc32577, Santa Cruz) anti- GRP78 (ab108613, Abcam), anti- IRE1α (ab48187, Abcam), anti-CHOP (2895, Cell Signaling Technology), anti-ATF4 (11815, Cell Signaling Technology), anti- XBP1 (ab37152, Abcam), anti-caspase-12 (ab62484, Abcam).
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7

Curcumin Modulates Endoplasmic Stress

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Curcumin was obtained from Selleck Chemicals (Houston, TX, USA) and dissolved in dimethyl sulfoxide (DMSO) to obtain an initial concentration of 10 mM and stored at −80°C. Phorbol-12-myristate-13-acetate (PMA) and lipopolysaccharide (LPS) were bought from Sigma-Aldrich (St. Louis, MO, USA). An Annexin V-APC/7-AAD kit was bought from Keygen Biotechnology (Nanjing, China). Rabbit antibodies against zonula occludens- (ZO-) 1 (8193), claudin-1 (13255), γH2AX (Ser139; 9718), glucose-regulated protein 78 (GRP78; 3183), protein kinase-like endoplasmic reticulum kinase (PERK; 5683), eukaryotic translation initiation factor 2α (eIF2α; 5324), p-eIF2α (3398), activating transcription factor 4 (ATF4; 11815), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 2118) were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit antibodies inducible nitric oxide synthase (iNOS; ab178945), C/EBP homologous protein (CHOP; ab179823), and caspase-12 (ab62484) were obtained from Abcam (Cambridge, UK). HRP-labelled goat anti-rabbit secondary antibody (HA1001) was purchased from HuaBio (Hangzhou, China).
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8

Western Blot Analysis of ER Stress Markers

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Denatured proteins extracted from PRKs were resolved by 10% SDS-PAGE (Beyotime). The resolved protein bands were subsequently transferred onto PVDF membranes. The membranes were incubated for 12 h at 4 °C with primary antibodies to SIRT4 (1:800 dilution; ab231137, Abcam), caspase 12 (1:800 dilution; ab62484, Abcam), C/EBP-homologous protein (CHOP; 1:1200 dilution, #5554; Cell Signaling Technology, Beverly, MA, United States), glucose regulated protein 78 (GRP78; 1:1000 dilution; ab108615, Abcam), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH, 1:2000 dilution; ab8245, Abcam). The membranes were then incubated with goat anti-rabbit antibody (1:12000 dilution; ab205718, Abcam) for 2 h at 25 °C. Immunoreactive bands were detected using an ECL system (Millipore, Temecula, CA, United States).
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9

Exosome Characterization and ER Stress Analysis

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The treated DRGn and SC-EXOs were collected. Cellular protein was extracted by RIPA lysis buffer. The equal proteins were separated on an SDS-PAGE, and then they are transferred to the PVDF membrane. The membrane was blocked with 5% nonfat dry milk for 1 hour. The PVDF membrane was incubated overnight at 4°C with primary antibodies, including Alix (1 : 2000, ab275377, Abcam), Hsp70 (1 : 2000, ab2787, Abcam), CD63 (1 : 2000, ab134045, Abcam), TSG101 (1 : 2000, ab125011, Abcam), GRP78 (1 : 2000, ab108613, Abcam), IRE1α (1 : 500, sc-390960, Santa cruz), p-IRE1α (1 : 2000, ab124945, Abcam), CHOP (1 : 500, sc-46661, Santa cruz), JNK (1 : 2000, ab208035, Abcam), p-JNK (1 : 2000, ab124956, Abcam), XBP1 (1 : 500, sc-8015, Santa cruz), Bcl-2 (1 : 2000, ab182858, Abcam), Bax (1 : 2000, ab32503, Abcam), Caspase-3 (1 : 2000, ab32351, Abcam), Caspase-12 (1 : 2000, ab62484, Abcam), and β-actin (1 : 2000, ab8226, Abcam). The membranes were incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies. The specific bands were observed by using the hypersensitive ECL chemiluminescence kit (New Cell & Molecular Biotech Co., Ltd, P10200).
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10

Apoptosis-related Protein Detection

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Primary antibodies were as follows: anti‐FABP4 (JM10‐99; HuaBio), anti‐BAX (ab32503; Abcam), anti‐BCL‐2 (ab3214; Abcam), anti‐BCL‐XL (ab32370; Abcam), anti‐cleaved caspase 3 (66470‐2‐Ig; Proteintech Group), anti‐p‐JNK (4668; Cell Signaling Technology), anti‐JNK (ab208035; Abcam), anti‐p‐eIF2α (ET1603‐14; HuaBio), anti‐eIF2α (RT1196; HuaBio), anti‐p‐PERK (sc32577; Santa Cruz), anti‐GRP78 (ER40402; HuaBio), anti‐IRE1α (ab48187; Abcam), anti‐CHOP (2895; Cell Signaling Technology), anti‐ATF4 (11815; Cell Signaling Technology), anti‐ATF6 (ER1706‐34; HuaBio), anti‐XBP1 (ab37152; Abcam) and anti‐caspase 12 (ab62484; Abcam).
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