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11 protocols using latrunculin a

1

YAP1/TAZ-responsive Luciferase Assay

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Luciferase assays were performed in MDA-MB-231 cells with the novel YAP1/TAZ-responsive reporter Hsa.CTGF-Lux. The −200/+27-CTGF promoter fragment was cloned in the pGL3-basic Luciferase Reporter Vector (Promega). Luciferase reporters (50 ng/cm2) were transfected together with CMV-β-gal (75 ng/cm2) to normalize for transfection efficiency. Each sample was transfected in duplicate and each experiment was repeated at least three times independently. NF2 is Addgene #19701. Latrunculin A was from Santa Cruz. The sequences of the siRNA used in this study are as follows (sense strand sequences are indicated): YAP1 1: GACAUCUUCUGGUCAGAGA dTdT; YAP1 2: CUGGUCAGAGAUACUUCUU dTdT; TAZ 1: ACGUUGACUUAGGAACUUU dTdT; TAZ 2: AGGUACUUCCUCAAUCACA dTdT; control: UUCUCCGAACGUGUCACGU dTdT. YAP1/TAZ siRNA 1 refers to the mix composed of oligos YAP1 1 and TAZ 1; YAP1/TAZ siRNA 2 refers to the mix composed of oligos YAP1 2 and TAZ 2.
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2

Chemokine-Induced Cell Migration Assay

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Cell culture media was purchased from Invitrogen. Pertussis toxin (PTX) and AMD3100 were from Sigma Aldrich, NSC23766 was from Tocris Bioscience, Latrunculin A and Jaspakinolide were from Santa Cruz Biotechnology, and recombinant CXCL12 from Peprotech. Cannulas were custom-made and purchased from Plastics One. pCMVR8.74 (Addgene plasmid #22036, RRID:Addgene_22036) and pMD2.G (Addgene plasmid #12259, RRID:Addgene_12259) were gifts from Didier Trono.
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3

Yeast Genetic Manipulation Protocols

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Yeast media were prepared as described in Adams et al. (1997) . Gene disruptions were performed as detailed in Sikorski and Hieter (1989) (link) and Taxis and Knop (2006) (link). Strains were cultured at 30° except where otherwise indicated. The genotypes of strains used in the course of this study, along with construction details, are provided in Supporting Information, Table S1. Oligonucleotides used during this study are listed in Table S2. Ethidium bromide (Thermo-Fisher Scientific, Waltham, MA) was used at a concentration of 25 µg/mL to destroy mtDNA. Cycloheximide (CHX; Sigma-Aldrich, St. Louis, MO) was used at a concentration of 10 µg/mL for plasmid counterselection on yeast extract peptone dextrose broth (YEPD) medium, 3 µg/mL for plasmid counterselection on yeast extract peptone 3% glycerol+3% ethanol (YEPGE) medium, and at 0.2 µg/mL in YEPD medium to test for activation of the PDR pathway. Ketoconazole (Tokyo Chemical Industry Co., Tokyo, Japan), another PDR substrate, was used at a concentration of 2 µg/mL in YEPD. To disrupt the actin cytoskeleton in logarithmic-phase cultures, latrunculin A (Santa Cruz Biotechnology, Dallas, TX) was used at a concentration of 10 µM in SD medium lacking leucine (SD-Leu), following the procedure of Hammermeister et al. (2010) (link). Serial dilution assays were performed as in Garipler et al. (2014) (link).
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4

Actin Depolymerization in Cos1 Cells

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The neuronal cells were treated with 1 μM, 5 μM and 10 μM Latrunculin A (Santa Cruz Biotechnology, sc-202691) in HBSS solution for 15 minutes at 25°C prior to imaging. The analysis was carried out on 1 μM and 5 μM only as the motion stopped in cells treated with 10 μM after about 15 minutes. In our hands, 1 μM Latrunculin A solution was sufficient to alter the morphology of Cos1 cells attached to coverslips from well spread out to round shapes, thus confirming its effectiveness in depolymerizing actin networks.
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5

Cell Cytoskeleton Inhibition Assay

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For drug inhibition studies, 10 min following cell seeding on micropatterns, the medium containing unattached cells was replaced with fresh medium containing either 20 nM latrunculin A (Santa Cruz Biotechnology Inc., SCB Inc.) or 5 nM swinholide A (SCB Inc.). For experiments that lasted more than 24 h, fresh drugs were added every 24 h until the end of the observation period. All inhibitors remained in the medium during the entire period of observation, except in drug washout experiments.
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6

Fluorescent Labeling and Protein Purification

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Transferrin-Alexa Fluor 594 (Invitrogen, T13343), EGF-Alexa Fluor 488 (Invitrogen, E13345), CK-636 (Selleck, S7497), Latrunculin A (Santa Cruz, sc-202691), Texas Red-X Phalloidin (Invitrogen, T7471), Phalloidin-iFluor 647 (Abcam, ab176759), EGF (Bio-Rad, PHP030A), GDP-β-S (Sigma-Aldrich, G7637), GTP-γ-S (Jena Bioscience, NU-412-2), ProLong Diamond Antifade (Thermo Fisher Scientific, P36970), RIPA lysis buffer (Beyotime, P0013), Bradford (Bio-Rad, 5000006), Fatty-free bovine serum albumin (BSA; Sangon Biotech, A602448-0050), anti-flag magnetic beads (Bimake, B26101), Strep-Tactin Sepharose (IBA Lifesciences, 12846436), Western Chemiluminescent HRP Substrate (Millipore, WBKLS0500), Ni-NTA Agarose (Qiagen, 30210), and Glutathione Sepharose High Performance (GE, 17527901).
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7

Inhibition of Autophagy and Actin Polymerization

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Bafilomycin A1 (BAF; Sigma-Aldrich 19-148) was resuspended in DMSO from Sigma-Aldrich and used at 400 nM for 4 h to block flux through the autophagy pathway. Latrunculin A (Santa Cruz, sc-202691) was resuspended in DMSO. In order to inhibit actin polymerisation, cells were treated with Latrunculin A at 0.5 µM (diluted in complete media) for 6 h. In experiments using BAF and Latrunculin A an equivalent volume of DMSO was used as the vehicle control.
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8

Antibodies and Cytoskeleton Modulators

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Restriction enzymes and buffers were from Promega. Anti-vimentin antibodies were: mouse monoclonal V9 clone (sc-6260) and its Alexa-488 conjugate from Santa Cruz Biotechnology, and mouse anti-vimentin monoclonal antibody (V5255) from Sigma. Anti-actin (A2066) and anti-Hsp70 (H5147) were from Sigma, and anti-α-tubulin (ab52866) and anti-desmin (ab15200-1) from Abcam. Anti-GFAP (Z0334) was from Dako. C3 transferase toxin was from Cytoskeleton. Latrunculin A and jasplakinolide were from Santa Cruz Biotechnology. HNE and PGA1 were from Cayman Chemical. 4,6-Diamidino-2-phenylindole (DAPI), cytochalasin B, nocodazole, blebbistatin, and ritonavir were from Sigma.
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9

Inhibition of Cellular Pathways

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The chemicals used in this study included U0126 (662005; Calbiochem), Y-27632 (257–00511; Wako), and Latrunculin A (sc-202691; Santa Cruz).
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10

Cell Viability Assay of Anticancer Compounds

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VeroE6 cells were seeded into 96-well plates at a confluency of 7E+03 cells per well and treated for 6 h with serial 2-fold dilutions of the different compounds. For LatrunculinA, the highest used concentration was 5 μM, for all the other compounds a starting concentration of 50 μM was used. Nocodazole, paclitaxel and vinblastine were purchased from Sigma. LatrunculinA was obtained from Santa Cruz Biotechnology. WithaferinA was obtained from Abcam. DMSO was used as control. Cell viability was determined by quantitation of ATP concentration using the CellTiter-Glo assay (Promega) as recommended by the manufacturer. A Mithras LB 940 plate reader (Berthold Industries) was used to measure the luminescence. A compound concentration that reduced the ATP amounts more than 20% was considered cytotoxic.
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