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6 protocols using cd19 pe hib19

1

Quantifying Cell Surface Antigens by Flow Cytometry

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Samples were processed into single cell suspensions and stained in FACS buffer (PBS + 2% FBS + 0.1% sodium Azide) with antibody for 45 minutes on ice followed by secondary (APC- or PE-conjugated streptavidin) binding for 20 minutes. Antibodies used were CD8-BUV395 (RPA-T8, BD Biosciences), CD4-Bv605 (RPA-T4, BD Biosciences), CD3-APC (SP34–2, BD Biosciences), FGFR4-PE (4FR6D3, BioLegend), CD19-PE (HIB19, Biolegend), PDL1-APC (MIH1, BD Bioscience), and PDL2-Bv421 (MIH18, BD Biosciences). Surface CAR was detected using biotinylated CD19 with Fc-tag (Acro Bio) or biotinylated FGFR4-Fc (Sino Bio). For evaluation of FGFR4 binders identified from phage screening, 500 nmol/L VH or Fab proteins were incubated with cells at 4°C for 30 minutes followed by PE-conjugated anti-human Fc antibody (Miltenyi Biotec, 130–101–576) for 30 minutes at 4°C. Cells were then analyzed by flow cytometry using BD LSR II. Tumor cell surface antigen was quantified using Quanti-Brite beads (BD Biosciences) according to the manufacturer's instructions. Quantibrite beads and corresponding tumor cells stained for FGFR4 antigen were acquired on a BD LSRII and analyzed using GraphPad Prism. Data were analyzed by FlowJo V10.
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2

Isolation and Purification of Immune Cells

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Cryopreserved PBMC from patients and healthy controls were thawed and stained with fluorochrome-conjugated Ab against: CD3 (FITC; UCHT1), CD4 (BV421; OKT4), CD8 (APC; HIT8), CD19 (PE; HIB19), and NKp46 (PE-Cy7; 9E2) all from BioLegend. Hereafter, the PBMC were subjected to a 4-way fluorescence-activated cell sorting (FACS) into CD3+ CD4+ T cells, CD3+ CD8+ T cells, CD3- CD19+ B cells, and CD3- NKp46+ NK cells using a FACS Aria II (BD Biosciences, CA, USA). After FACS the cells were immediately lysed in Qiazol lysis buffer and frozen at −80 °C. The purity of isolated cells was 99.3% for CD4+ T cells, 99.5% for CD8+ T cells, 99.6% for B cells, and 98.1% for NK cells.
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3

Quantification of Cell Surface Antigens

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Samples were processed into single cell suspensions and stained in FACS buffer (PBS + 2% FBS + 0.1% sodium Azide) with antibody for 45 minutes on ice followed by secondary (APC- or PE-conjugated streptavidin) binding for 20 minutes. Antibodies used were CD8-BUV395 (RPA-T8, BD Biosciences), CD4-Bv605 (RPA-T4, BD Biosciences), CD3-APC (SP34–2, BD Biosciences), FGFR4-PE (4FR6D3, Biolegend), CD19-PE (HIB19, Biolegend), PDL1-APC (MIH1, BD Bioscience), PDL2-Bv421 (MIH18, BD Biosciences). Surface CAR was detected using biotinylated CD19 with Fc-tag (Acro Bio) or biotinylated FGFR4-Fc (Sino Bio). For evaluation of FGFR4 binders identified from phage screening, 500 nM VH or Fab proteins were incubated with cells at 4 °C for 30 minutes followed by PE conjugated anti-human Fc antibody (Miltenyi Biotec, 130–101-576) for 30 minutes at 4 °C. Cells were then analyzed by flow cytometry using BD LSR II (San Jose, CA). Tumor cell surface antigen was quantified using Quanti-Brite beads (BD Biosciences) according to the manufacturer’s instructions. Quantibrite beads and corresponding tumor cells stained for FGFR4 antigen were acquired on a BD LSRII and analysed using Graphpad Prism. Data were analyzed by FlowJo V10.
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4

Flow Cytometric Analysis of BLaER1 Transdifferentiation

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For flow cytometric analysis of BLaER1 transdifferentiation and surface marker expression, 1 × 106 native or transdifferentiated BLaER1 cells were collected, washed once in FACS buffer (10% FCS, 0.1% Sodium acetate in PBS; 10 min, 300g, 4°C) and stained with CD11b-APC (M1/70, Biolegend), CD19-PE (HIB19, Biolegend), CD14-PacBlue (M5E2, Biolegend), CD163-PE (GHI/61, BD), CD206-APC (19.2, BD), CD11c-VioBlue (MJ4–27G12, Miltenyi), CD4-APC (RPA-T4, Biolegend), CXCR4-PE (12G5, BD), CCR5-PE (T21/8, Biolegend) or respective isotype controls (Biolegend, BD, Miltenyi) and Fixable Viability Dye eFluor 780 (Thermo Fischer) in presence of FC Block (BD, 20 min, 4°C). Stained cells were washed in FACS buffer twice and fixed in 2% paraformaldehyde (30 min, RT), before analyzing on a LSR II instrument (BD). For readout of HIV-1-mCherry infection, up to six wells of a 96-well plate were pooled and stained with CD11b-APC and Fixable Viability Dye eFluor 780 as detailed above. For intracellular SAMHD1 staining, cells were fixed in Cytofix Buffer (BD; 37°C, 10 min), subsequent to cell surface staining, and permeabilisation with Perm Buffer III (BD; 2min on ice), before staining with anti-SAMHD1 (12586–1-AP, Proteintech) or an isotype control (CST; 60 min, RT) and anti-rabbit IgG-DyLight 405 (Thermo Fischer; 60 min RT). Infected cells were analyzed on a BD LSRFortessa.
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5

Multiparameter Flow Cytometry Analysis of PBMCs

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Flow cytometry was performed on PBMCs from both the influenza vaccine immunized volunteers and those from the VRC 902 Study. There were 2 panels of antibodies; one for CXCR5+CD4+ T cell subsets, and the second panel for memory B cells. For the staining of T cells, the following antibodies were used: CXCR5-AF488 (RF8B2, BD Biosciences, San Diego CA), PD1-PE (eBioJ105, eBioscience, San Diego, CA), CD45RO-PE/CF594 (UCHL1, BD Biosciences), CCR6-PerCP/Cy5.5 (G034E3, Biolegend, San Diego, CA), ICOS-PE/Cy7 (C398.4A, Biolegend), CCR7-AF647 (3D12, BD Biosciences), CXCR3-AF700 (1C6/CXCR3, BD Biosciences), CD4-APC/eFluor 780 (SK3, eBioscience), CD27-V450 (M-T271, BD Biosciences), CD8-BV510 (SK1, BD Biosciences), and CD3-BV605 (SK7, BD Biosciences). For B cells, IgD-AF488 (IA6-2, Biolegend), CD19-PE (HIB19, Biolegend), CD38-PE/Cy7 (HB-7, Biolegend), and CD27-BV450 (M-T271, BD Biosciences) were used. To exclude dead cells, Zombie UV Fixable Viability Kit (Biolegend) was used. For compensation, UltraComp eBeads (eBioscience) were used on each day the experiment was performed.
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6

Multiparametric Flow Cytometry Profiling of CLL Cells

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After treatment with selinexor, leptomycin B or brefeldin A (BFA, GolgiPlug, BD Bioscience) for the required timepoint, Fc receptors were blocked on CLL cells with 10% human serum for 15 min then cells were stained with CD19-PE (HIB19, Biolegend) or CD19-PB, CD5-PerCP (UCHT2, Biolegend) or CD5-APC, ULBP-1-PE (170818, R&D Systems), ULBP-2/5/6-PerCP (165903, R&D Systems), CD54-PB (HCD54, Biolegend), B7H6-APC (875001, R&D Systems), ecto-calreticulin-A488 (EPR3924, Abcam), MICA/B-PE/Cy7 (6D4, Biolegend), CD20-PE (2H7, BioLegend), CD38-A488 (HIT2, BioLegend), FAS-FITC (DX2, Biolegend), DR4-PE (DJR1, Biolegend), DR5-APC (DJR2-4, Biolegend), HLA-E-PE/Cy7 (3D12, Biolegend) and total HLA class I proteins (W6/32, Biolegend) for 30 min at 4 °C. Assessment of CLL cells that have recently egressed from the lymph nodes was performed as previously described [30 (link), 31 (link)]. Patient CLL cells were rested for 1 h at 37 °C, then stained with CD19-BV510 (HIB19), CD5-APC, HLA-E-PE/Cy7 (3D12), pan-HLA (W6/32) and CXCR4-PE (12G5, Biolegend). Cells were then acquired on a BD FACS Aria II.
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