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8 protocols using revertra qpcr rt kit

1

RT-qPCR Analysis of CD74 mRNA Expression

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Total RNA was extracted from BV2 cells using TRIzol reagent (Invitrogen). The mRNA was reverse transcribed using the ReverTra qPCR RT Kit (Toyobo, Osaka, Japan). The CD74 mRNA level was measured with the SYBR Premix Ex TaqII kit (Takara, Dalian, China) using a 7300 real-time PCR system (Thermo Fisher Scientific). The CD74 mRNA level was normalized to the expression of
β-actin and calculated using the 2
–ΔΔCt method.
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2

Extraction and Quantification of Intestinal RNAs

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Total cellular RNAs were extracted from the small intestinal tissues with RNAiso™ Plus (TaKaRa, Japan) according to the instruction of the manufacturer. Reverse transcriptions were done with the ReverTra qPCR RT kit (FSQ-101; TOYOBO, Japan); the reaction conditions were 37 °C for 30 min, then 98 °C for 5 min. The 20 μL of real-time polymerase chain reaction (PCR) reaction mixture contained 2 μL cDNA, 10 μL SYBR® Premix Ex Taq™ II (Perfect Real Time, DRR081, TaKaRa), 0.8 μL PCR forward primer, 0.8 μL PCR reverse primer, 0.4 μL ROX reference dye (50×), and 6 μL dH2O. The PCR primers include GAPDH: 5’-TCTTC CAGGA GCGAG ATCCC-3’/5’-AGTGA TGGCA TGGAC TGTGG TCAT-3’ (PCR product, 320 bp), and AQP1: 5’-TCACT TGGCC GAAAT GACCTG-3’/5’-GTCCC ACCCA GAAAA TCCAG T-3’ (PCR product, 280 bp). The PCR was run in a real-time PCR instrument (7500; ABI Co., USA) at 95 °C for 30 s, followed by incubation at 95 °C for 5 s and 60 °C for 31 s, for a total of 40 cycles.
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3

Quantifying Keap1 Gene Expression

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Total RNA was isolated from the treated cells using mirVana miRNA Isolation Kit (Life Technologies, Palo Alto, CA, USA). Total RNA was then reverse-transcribed to cDNA using a ReverTra qPCR RT Kit (Toyobo, Osaka, Japan). Each PCR reaction was run using a Thunderbird SYBR qPCR Mix (Toyobo) on a Light Cycler 1.5 (Roche, Indianapolis, IN, USA). The comparative Ct (ΔΔCt) method was used to determine the fold changes in the expression using glyceraldehyde-3-phospate dehydrogenase (GAPDH). Each sample was run in triplicate. The following primers were used: Keap1 (forward, 5′-GGGTCCCCTACAGCCAAG-3′ reverse, 5′-TGGGGTTCCAGAAGATAAGC-3′); GAPDH (forward, 5′-CAACAGCCTCAAGATCATCAGC-3′ reverse, 5′-TTCTAGACGGCAGGTCAGGTC-3′). The cycling conditions were as follows: initial denaturation at 98 °C for 5 min followed by 45 cycles at 98 °C for 15 s, 58 °C for 30 s, and 72 °C for 60 s. These experiments were performed in triplicate.
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4

RNA Isolation and qPCR Analysis

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Total RNA was isolated using RNeasy tissue kit (Qiagen, CA, USA)) and cDNA was synthesized using ReverTra qPCR RT kit (Toyobo, Osaka, Japan). The relative amount of mRNA expression was analyzed by quantitative PCR (qPCR) with THUNDERBIRDTM SYBR qPCR Mix (Toyobo, Osaka, Japan) according the protocol provide by the manufacturer. The results were normalized by the 18S or Gapdh expression levels. See Table S1 for primer sequences.
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5

Quantification of Nrf2 and Antioxidant Genes

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Total RNA was isolated from the treated cells using a mirVana™ miRNA Isolation Kit (Life Technologies, Palo Alto, CA, USA). Total RNA was then reverse-transcribed to cDNA using a ReverTra qPCR RT Kit (Toyobo, Osaka, Japan). Each reaction was run using Thunderbird SYBR qPCR Mix (Toyobo) on a Light Cycler 1.5 (Roche, Indianapolis, IN, USA). The comparative Ct method was used to determine the fold changes in the expression using glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as a control. Each sample was run in triplicate. Primers were used for Nrf2 (forward, 5′-AGTGGATCTGCCAACTACTC-3′; reverse, 5′-CATCTACAAACGGGAATGTCTG-3′), malic enzyme 1 (ME1; forward, 5′-CTGCCTGTCATTCTGGATGT-3′; reverse, 5′-ACCTCTTACTCTTCTCTGCC-3′), glutamate-cysteine ligase catalytic subunit (GCLC; forward, 5′-TGAAGGGACACCAGGACAGCC-3′; reverse, 5′-GCAGTGTGAACCCAGGACAGC-3′); glutamate-cysteine ligase modifier subunit (GCLM; forward, 5′-AATCTTGCCTCCTGCTGTGTGA-3′; reverse, 5′-TGCGCTTGAATGTCAGGAATGC-3′), and GAPDH (forward, 5′-CAACAGCCTCAAGATCATCAGC-3′; reverse, 5′-TTCTAGACGGCAGGTCAGGTC-3′). The cycling conditions consisted of initial denaturation at 98 °C for 5 min followed by 45 cycles at 98 °C for 15 s, 58 °C for 30 s, and 72 °C for 60 s. These experiments were performed in triplicate.
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6

Quantitative Analysis of mRNA Expression

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Total RNA was isolated using RNeasy tissue kit (Qiagen, Valencia, USA), and cDNA was synthesized using ReverTra qPCR RT kit (Toyobo, Osaka, Japan). The relative amount of mRNA expression was analyzed by quantitative PCR (qPCR) with THUNDERBIRD™ SYBR qPCR Mix (Toyobo) according to the protocol provided by the manufacturer. The results were normalized by the 18S expression levels. See Table 1 for primer sequences.
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7

Quantitative PCR Analysis of Gene Expression

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RNA was extracted from frozen tissue samples, and complementary DNA was generated with oligo-dT primers using an RNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) and a ReverTra qPCR RT Kit (Toyobo Co., Osaka, Japan) according to the manufacturer’s protocol, respectively. qPCR amplification was performed using the TaqMan Fast Advanced Master Mix (Life Technologies, Carlsbad, CA, USA) in 96-well optical plates on an ABI 7500 Fast Real-Time PCR System (Life Technologies). Gene expression was normalized to levels of 18S rRNA as an internal control and expressed as fold increases using the ΔΔCt method. For details of the method, see supporting information.
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8

Quantitative RT-PCR for CAR-MUC1 Expression

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Total RNA was isolated from T cells using the Blood RNA kit (Biomiga, San Diego, CA, USA) and reverse transcribed into cDNA using the ReverTra qPCR RT kit (TOYOBO, Osaka, Japan). The following primers were used for RT‐qPCR: GAPDH‐forward: 5′‐GACCACAGTCCATGCCATCA‐3′, GAPDH‐reverse: 5′‐CATCACGCCACAGTTTCCC‐3′, scFv of CAR‐MUC1‐forward: 5′‐GAGCAAAGACGGGACAGC‐3′, scFv of CAR‐MUC1‐reverse: 5′‐AGCCAGGACTCCACCAACC‐3′.
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