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5 protocols using bnip3

1

Visualizing LC3 and Lysosome Dynamics

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For LC3 puncta imaging, HCT116 cells were transfected with RFP-LC3 plasmid using Lipofectamine 2000. After overnight culture, cells were transfected with Phage-puro or Phage-puro-ERβ plasmid for 24 h, fixed with 4% paraformaldehyde, and observed under the confocal microscope. To observe cellular acidic vesicular organelle (AVOs) development, HCT116 were incubated with acridine orange (AO) (1ug/ml) in PBS for 15 min at 37°C after treatment. For the exploration of lysosome function, cells were transfected with RFP-p62 plasmid or stained by Lyso-Tracker Red (Invitrogen). To detect the effect of ERβ overexpression on BNIP3 and ki67 (Proteintech) in HCT116, cells were fixed, permeabilized, and incubated with primary antibodies at 4°C overnight. Finally, cells were washed and then were incubated with fluorescent secondary antibodies (Invitrogen) at RT for 1 h. Samples were examined by a laser-scanning confocal microscope. Nuclei were revealed by 2-phenylindole dihydrochloride (DAPI) staining.
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2

Osteoclastogenesis Regulation by Metformin

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Metformin was purchased from Sigma-Aldrich. The primary antibodies of GAPDH, BECN1, LC3, BNIP3, BCL2 and E2F1 were acquired from Proteintech (Wuhan, China). The 4, 6-diamidino-2-phenylindole (DAPI) was purchased from Solarbio (Beijing, China). The receptor activator of nuclear factor kappa-B ligand (RANKL) and macrophage-colony stimulating factor (M-CSF) were obtained from R&D Systems (Minnesota, USA). We purchased Minimum Essential Medium Alpha (MEM-α), fetal bovine serum (FBS), penicillin, streptomycin, and trypsin from Gibco (Grand Island, NY, USA). The cell counting kit-8 (CCK-8) was purchased from Dojindo (Kumamoto, Japan). Enzyme‐linked immunosorbent assay (ELISA) kits were acquired from CUSABIO (Wuhan, China). The TRAP staining kit was obtained from Solarbio (Beijing, China).
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3

Antibody Reagents for Autophagy Analysis

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The antibodies used in this study were purchased from the following vendors: CST (USA)-LC3B, cleaved caspase-3, AMPK, P-AMPK, mTOR, P-mTOR; Abcam (UK)-P62, BNIP3; Sigma (USA)-LC3B-II; Novus (USA)-PINK1, HIF-1α; Santa Cruz(USA)-BNIP3; Proteintech (China)-TOMM20, COX IV, β-actin, anti-mouse IgG, anti-rabbit IgG, HRP-linked antibody; Invitrogen (USA):-Alexa Fluor 488 donkey anti-Rabbit IgG(H + L), Alexa Fluor 594 donkey anti-mouse IgG(H + L). Bafilomycin A1 (Sigma, USA) was dissolved in dimethyl sulfoxide (DMSO; Sigma, USA) and added to media to the final concentrations described.
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4

Western Blot Analysis of Apoptosis Regulators

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Proteins were extracted from cells and tissues by protein extraction reagent SDS Lysis Buffer (Beyotime, Shanghai, China) and the samples were centrifuged at 10,000 g for 15 min at 4°C to collect the supernatant. With the use of the BCA protein assay kit (Beyotime, Shanghai, China), the protein concentration was determined and the protein was separated by 12.5% SDS-PAGE to transfer into PVDF membranes. The membranes were blocked for 2 h at room temperature (25°C) and incubated with different SGK1 (Abcam, Ab32374), FOXO3a (ProteinTech, 10849-1-AP), p-FOXO3a (Affinity, AF3020), BNIP3 (ProteinTech, 68091-1-Ig), Bcl-2 (ProteinTech, 26593-1-AP), Bax (ProteinTech, 50599-2-Ig), Bim (ProteinTech, 22037-1-AP), LC3 (Abcam, ab192890), Beclin-1 (Cell Signaling Technology, 3738S), p62 (ProteinTech, 18420-1-AP), and GAPDH (Santa Cruz, sc-47724) antibody overnight at 4°C. After incubation with the primary antibody, the secondary antibody was followed for 2 h at room temperature (25°C) and washed with TBST. Finally, the results were visualized by using film exposure with an ECL substrate. Relative expression was quantified with ImageJ and GAPDH was used as an internal control.
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5

Western Blot Analysis of Liver Proteins

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Liver tissue samples and cultured cells were lysed in RIPA buffer. The nuclear and cytoplasmic protein fractions were extracted using a nuclear and cytoplasmic protein extraction kit (Beyotime, Shanghai, China) according to the manufacturer’s protocol. Protein concentration was measured using a BCA protein assay kit (Boster, Wuhan, China). The protein samples were separated by SDS–PAGE (Bio–Rad Laboratories Inc., Berkeley, CA, USA) and transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore Corp, Billerica, MA, USA). The PVDF membranes were incubated with primary antibodies against PGC-1α, BNIP3, Beclin-1, MCAD, CPT-1α (1:500; Proteintech, Wuhan, China), PPAR-α (1:500; Cell Signaling Technology, USA), Hif-2α and LC3B (1:1000; Abcam, Cambridge, MA, USA), and Lamin A/C (1:500; Zhongshan Jinqiao, China) for 24 h, and then incubated with secondary antibody (1:500; Zhongshan Jinqiao, China) for 1 h at room temperature. The protein bands were visualized by enhanced chemiluminescence (ECL) assay (Thermo Scientific, USA), and the blots were analyzed using Image Lab 3.0 (Bio–Rad, Hercules, CA, USA). The gray value of protein bands was calculated using Image J 1.50i (National Institutes of Health, USA) and normalized to that of the internal control, β-actin.
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