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62 protocols using nonfat milk

1

Protein Extraction and Western Blot Analysis

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Through the use of 1000 mL of RIPA buffer, total protein was extracted from 100 mg tissue standardizing all the specimens to 1.0 mg/ml. On a 6 to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis plate, a total of 20 mL was added and transferred onto a polyvinyllidenedifluoride (PVDF) membrane, thus each sample’s total amount was 20 μg based on the of Western blotting. Blocking the membranes with 5% nonfat milk (Becton Dickinson, Franklin Lakes, NJ, USA), as well as washing and exploring with the following primary antibodies: rat anti-human Talin-1 (1:1000; Abcam, Cambridge, UK), and GAPDH (1:500; Abcam, Cambridge, UK). After washing, membranes were incubated with a horseradish peroxidase (HRP)-conjugated goat anti-rat (1:2000; Sigma-Aldrich, St. Louis, MO, USA) for 1 h. Then, on the basis manufacturer’s instructions (Thermo Fisher Scientific, Waltham, MA, USA), membranes were washed and cultivated using an enhanced chemiluminescence kit. Each sample was analyzed in triplicate by Western blotting. Afterwards, Image-Pro Plus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA) was applied to analyze the band intensities using a flatbed scanner.
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2

Western Blot Protein Analysis

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All of the cells were lysed on ice in RIPA buffer (Solarbio) supplemented with protease and phosphatase inhibitor cocktail (100 ×; Thermo Fisher) for 10 min. A quarter volume of 5 × loading dye was added to the supernatants. Then the mixtures were heated at 95°C and stored at − 80°C. SDS-PAGE was used to separate the samples, and they were then transferred to a nitrocellulose filter membrane (Roche). The membranes were blocked for 1 h while shaking at room temperature with 5% non-fat milk (Becton Dickinson) in 1 × Tris-buffered saline and 0.1% Triton 100. The membranes were incubated with primary antibodies followed by horseradish peroxidase-conjugated secondary antibodies. The band was visualized using the Automatic chemiluminescence imaging system (Tanon). The band intensity was analyzed using Quantity One software.
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3

Western Blot Analysis of Protein Samples

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All of the cells were lysed in RIPA buffer (Solarbio, Beijing, China) supplemented with protease and phosphatase inhibitor cocktail (100×; Thermo Fisher) and lysed for 10 min on ice. The supernatants were mixed with 1/4 volume of 5× loading dye. Then the mixtures were heated at 95°C and stored at -80°C. The samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a nitrocellulose filter membrane. The membranes were blocked with 5% non-fat milk (Becton Dickinson, Franklin Lakes, NJ, United States) in 1× Tris-buffered saline and 0.1% Triton 100 for 1 h while shaking at room temperature. The membranes were incubated with primary antibodies followed by horseradish peroxidase-conjugated secondary antibodies. The band was visualized using the Kodak film exposure detection system. The film was scanned and the band intensity was analyzed using Quantity One software.
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4

Quantitative Western Blot Analysis

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Total protein was extracted by 1000 mL of RIPA buffer from 100 mg tissue. For cells, VSMCs were washed 3 times in PBS and 100 μL RIPA buffer (Cell Signaling Technology, MA, USA) per well (6-well plate) applied to cells. Cell lifter (Corning Costar) was used to mix and lyse the cells, which were subsequently transferred to eppendorf tubes. All of the samples were standardized to 1.0 mg/mL. A total of 20 mL was loaded on a 6% to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis plate and transferred onto a polyvinylidenedifluoride membrane, so the total amount of each sample of one western blot gel was 20 μg. Membranes were blocked with 5% nonfat milk (Becton Dickinson, Franklin Lakes, NJ), washed, and probed with the following primary antibodies: rat anti-human Talin (1:1000; Abcam, Cambridge, United Kingdom), and GAPDH (1:500; Abcam). After washing, membranes were incubated with a horseradish peroxidase-conjugated goat anti-rat (1:2000; Sigma) for 1 h. Then, membranes were washed and developed using an enhanced chemiluminescence kit according to the manufacturer’s instructions (Thermo Fisher). Western blot assays were repeated three times. After scanning the blots using a flatbed scanner, the band intensities were analyzed using the Image-ProPlus software version 6.0 (Media Cybernetics, Inc., Rockville, MD).
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5

Western Blot Analysis of Apoptosis Markers

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HUVECs were collected and added with RIPA buffer (Beyotime, China) to extract the total protein. The concentrations of total protein were determined by using BCA method with a BCA Protein Assay Kit (KeyGEN Biotech, China). Proteins were then separated by the sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred onto a polyvinylidene fluoride (PVDF) membrane (Millipore, USA). Next, the PVDF membrane was blocked in 5% nonfat milk (Becton Dickinson, USA) for 30 minutes at room temperature; followed by an overnight incubation at 4°C with primary antibodies, including cleaved caspase-3 (ab2302, Abcam, USA), PTEN (ab192396, Abcam, USA), and β-actin (ab8226, Abcam, USA). After the overnight incubation, PVDF membrane was washed for 3 times with TBST, and then the membrane was incubated with the secondary antibody for 2 hours at room temperature. The protein bands were quantified by using the ImageJ software, and the intensity of the protein bands was analyzed by the Quantity One analysis system (BioRad, USA). β-Actin was used as the internal control.
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6

Cdc42 Regulation by miR-29a in MIN6 Cells

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Transient transfection was performed when the MIN6 cell confluency reached 75%, and protein extraction was carried out after 40 h. Cdc42-pcDNA3.1, Cdc42-siRNAs, miR-29a mimic, miR-29a inhibitor, and miR-29a-NC were transiently transfected into cells. Protein was electrophoresed on SDS-polyacrylamide gel consisting of 5% stacking gel and 12% separating gel (Solarbio). First, 15 μg of protein was added to each slot. After the proteins were separated, they were transferred to a polyvinylidene fluoride (PVDF) membrane (Merck Millipore, Billerica, MA, USA) under 200 mA for 1 hour and 15 minutes. Next, 5% nonfat milk (Becton, Dickinson, and Company, Franklin Lakes, NJ, USA) was used for 2 h blocking. Then, the PVDF membrane was incubated overnight at 4°C with diluted (1 : 1000) primary antibodies (Cdc42 antibody, Abcam, Cambridge, MA, USA; β-catenin, Affinity Biologicals, Shanghai, China; and β-actin, Zhongshanjinqiao Company, Beijing, China). Subsequently, the membrane was incubated for 1.5 h at room temperature with diluted (1 : 5000) secondary antibodies (HPR-labeled anti-rabbit IgG of goat, HPR-labeled anti-rat IgG of goat; both were purchased from Zhongshanjinqiao Company). Lastly, the proteins were detected using an EasySee Western Blot Kit (TransGen Biotech, Beijing, China) with a Gel Imaging System (Bio-Rad, Hercules, CA, USA).
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7

Protein Isolation and Western Blot

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Protein isolation with lysis buffer was first executed, followed by electrophoretically separation via SDS-PAGE and then transferring onto PVDF membranes (Millipore, Billerica, MA). Subsequently, the membranes were blocked in 5% non-fat milk (Becton–Dickinson and Company, Suzhou, China) and bred overnight with primary antibodies at 4℃. Then, the membranes were co-incubated for 1 h with secondary antibody at room temperature. ECL chemiluminescent detection system (Thermo Fisher Scientific, Rochester, NY) were thereafter utilized for protein band visualization.
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8

Quantification of SMAD3 Protein in Aortic Tissue

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Aortic tissues or VSMCs were lysed using RIPA lysis buffer containing protease inhibitors and Western blotting along with quantification of images were performed as described previously.18 RIPA buffer (100 mg/1000 mL) was used to extract total protein from aortic specimens. Phosphate buffered Saline and RIPA buffer (100 μL per well) (Cell Signaling Technology) were used to wash VSMCs 3 times. A cell lifter obtained from Corning Costar was employed for lysing the specimens, with protein concentrations adjusted to 1.0 mg/mL. The lysate (20 μL, or 20 μg) was separated by 6%‐12% sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis (PAGE) and bands were electro‐transferred onto a polyvinylidene difluoride membrane. Nonfat milk (5%) (Becton Dickinson) was used to block the membranes, followed by washing, probing with rat anti‐human SMAD3 (1:1000; Abcam) and anti‐GAPDH (1:500; Abcam) primary antibodies, and incubation with a horseradish peroxidase (HRP) conjugated goat anti‐rat secondary antibodies (1:2000; Sigma) for 60 minutes. Further, an enhanced chemiluminescence kit was used to wash and expose the membrane following the manufacturer's protocols (Thermo Fisher). The immunoblots obtained from three rounds of Western blot analyses were assessed on a flatbed scanner, and the intensities were calculated with Image‐Pro Plus (v6.0; Media Cybernetics).
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9

Immunoblotting of A375 Cells

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For immunoblotting, A375 cells were seeded at a density of 8 × 105 cells in 6 cm culture dishes, allowed to adhere overnight and treated with 3u compound for 6 h. Then, the cells were washed once with PBS, pelleted and lysed in the lysis buffer (50 mM Tris (pH 7.4), 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS), and an EDTA-free protease inhibitor cocktail tablet (Roche, Mannheim, Germany) was added. The protein concentration was determined using an Enhanced BCA Protein Assay Kit (Beyotime Biotechnology). Equal quantities of cell lysate protein (20 ug) were separated by 12% SDS polyacrylamide gel electrophoresis and blotted onto PVDF membranes (Millipore Corp., Billerica, MA, USA). Membranes were blocked with 10% nonfat milk (Becton Dickson, NJ, USA) in Tris-buffered saline-Tween-20 buffer (10 mM Tris, 100 mM NaCl, 0.1% Tween-20) for 1 h at room temperature. The blots were probed overnight at 4 °C with a primary antibody followed by horseradish-peroxidase-conjugated anti-mouse or anti-rabbit IgG antibodies (Thermo Fishier Scientific) for 1.5 h at room temperature. The epitope was detected with Immobilon Western Chemiluminescent HRP Substrate from Millipore (Whitehouse Station, NJ, USA). Chemiluminescent signals were detected and analyzed using a Tanon-5500 chemiluminescent imaging system (Tanon, Shanghai, China).
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10

Western Blot Analysis of SOX10 Protein

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Cell protein lysates were prepared using RIPA buffer (Solarbio, Beijing, China) followed by the addition of protease inhibitor cocktail (Promega) and PMSF (Solarbio), according to the manufacturers’ instructions. The protein concentration was measured using the BCA Protein Assay kit (Generay). Proteins were separated by 10% SDS-PAGE and then transferred to PVDF membranes (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The membranes were incubated with 5% non-fat milk (Becton-Dickinson and Company, Suzhou, China) for 2 h at room temperature and incubated overnight at 4°C with rabbit-anti-human SOX10 (molecular weight: 60 kDa) (1:2,000; cat. no. DF8009; Affinity, Cincinnati, OH, USA) and rabbit-anti-human GAPDH (molecular weight: 37 kDa) (1:5,000; cat. no. 10494-1-AP; Protein Tech Group, Inc., Chicago, IL, USA) antibodies. Subsequently, the membranes were incubated at room temperature with IgG (H+L) HRP (1:10,000; cat. no. RS0002; Ruiying Bio, Suzhou, China) for 1 h. Proteins were visualized with an enhanced ECL reagent (Vazyme, Nanjing, China) by ChemiDoc™ XRS+ (Bio-Rad Laboratories, Inc.).
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