The largest database of trusted experimental protocols

8 protocols using pacritinib

1

Mass Spectrometry Analysis of Screened Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
D-luciferin was purchased from Gold Biotechnologies (St. Louis, MO). Screened compounds are described below. Repurchased hits, including Momelotinib, TG101209, Fedratinib, Pacritinib, Danusertib, Saracatinib, Ibrutinib, and Bosutinib were obtained from Selleck (Houston, TX). For mass spectrometric experiments, LC–MS grade acetonitrile (ACN) and water were from J.T. Baker (Philipsburg, NJ). Formic acid was obtained from Pierce (Rockford, IL) and iodoacetamide (IAA) and dithiothreitol (DTT) were purchased from Sigma-Aldrich (St. Louis, MO). Sequencing grade trypsin was supplied by Promega (Madison, WI).
+ Open protocol
+ Expand
2

Inhibitors of IRAK1/4 and Tyrosine Kinases

Check if the same lab product or an alternative is used in the 5 most similar protocols
IRAK1/4 Inhibitor I was purchased from R&D Systems (MN, USA). Lenvatinib was purchased from MedChemExpress (NJ, USA). Pacritinib and Pf‐06650833 were purchased from Selleck (Shanghai, China).
+ Open protocol
+ Expand
3

Kinase Inhibitor Compounds Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
JAK Inhibitors (AZD1480, baricitinib, peficitinib, ruxolitinib and pacritinib), Fms-related receptor tyrosine kinase 3 (FLT3) inhibitors (gilteritinib, quizartinib, FF10101, G-749 and MRX-2843) and other kinase inhibitors including an inhibitor of interleukin 1 receptor associated kinase 1 (IRAK1) and IRAK4, (IRAK1/4 inhibitor), and the ros proto oncogene (ROS1) /anaplastic lymphoma kinase (ALK) inhibitor lorlatinib were purchased from Selleck Chemicals LLC. pacritinib was also provided by CTI BioPharma Corp. through a Materials Collaborative Research and Development Agreement (M-CRADA). Inhibitors were dissolved in DMSO at a stock concentration of 10 mM/mL, except for pacritinib at 5 mM/mL. All stocks were aliquoted and stored at − 20 °C.
+ Open protocol
+ Expand
4

Evaluation of JAK Inhibitors in Biological Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Type-I JAK inhibitors rux (CAT#S1378), BMS-911543 (CAT#S7144), AZD-1480 (CAT#S2162), fedratinib (CAT#S2736), momelotinib (CAT#S2219), and pacritinib (CAT#S8057) were all purchased from Selleckchem. Type-II JAK inhibitor, CHZ-868 (CAT#HY-18960) was purchased from MedChemExpress. Inhibitor stocks (10 mM) were diluted in DMSO so that the final concentration of DMSO in culture media and assays was 0.05–0.1%.
+ Open protocol
+ Expand
5

Anticancer Agents Sourcing Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
All the chemicals employed in this study were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). Anticancer agents, vinorelbine ditartrate (S4269), picropodophyllin (S7668), pacritinib (S8057), and SKLB610 (S6526) were obtained from Selleck Chemicals (Houston, TX, USA).
+ Open protocol
+ Expand
6

Optimizing Immune Modulation Experiments

Check if the same lab product or an alternative is used in the 5 most similar protocols
PMA (Sigma-Aldrich) was used at 0.4-100 ng/ml and ionomycin (Sigma-Aldrich) was used at a concentration of 100 ng/ml. 3-azido-3-deoxythymidine (zidovudine; AZT) (Sigma-Aldrich) was used at 10 µM, raltegravir at 5 µM and efavirenz at 0.32 µM were obtained from the NIH AIDS Research and Reference Reagent Program. TNFα (Merck) was used at a concentration of 0.08-2 ng/ml and LPS at 100 ng/ml (Merck). Fedratinib, TG101209, AZD1480, AZ960, gandolitinib, WP1066, XL109, ruxolitinib, momelotinib, JQ1 were used at a concentration of 0.2-5 µM, pacritinib at 40 nM-1 µM and Q-VD-Oph at 10 µM (all from Selleckchem). Vorinostat (SAHA) was used at a concentration of 0.2-5 µM (Prochifar srl, Italy) and panobinostat at 3.2-400 nM (LC Laboratories).
+ Open protocol
+ Expand
7

Microglial Pyroptosis Regulation by TLR4 and DDX3X

Check if the same lab product or an alternative is used in the 5 most similar protocols
In this study, the Chinese Academy of Science cell bank (Shanghai, China) provided the mouse microglial cell line, BV2 cells and cultured in high‐glucose Dulbecco's modified eagle medium (DMEM) containing foetal bovine serum (10%, FBS; Gibco, Carlsbad, CA, USA) and penicillin–streptomycin solution (100 U/ml and 100 mg/ml, respectively, Invitrogen, Carlsbad, CA, USA). Cells were maintained with 5% CO2 at 37°C. The plasmids pcDNA3.1‐TLR4 and pcDNA3.1‐DDX3X were constructed by Asia‐Vector Biotechnology (Shanghai, China). The siRNA sequences and negative control siRNA/shRNA were provided by Sangon Biotech (Guangzhou, China) (Table S1). The plasmids and siRNAs were transfected into microglial cells using Lipo3000 (Invitrogen) following the manufacturer's instructions. Then, the cells were exposed to lipopolysaccharides (LPS, 1 µg/ml for 8 h) and adenosine triphosphate (ATP, 5 mM for 2 h) obtained from Sigma–Aldrich (St. Louis, MO, USA) to induce pyroptosis as previously described,23, 24 with or without the treatment of pacritinib (SB1518; Selleck Chemicals; 10 µM for 48 h) 24 h after siRNA or plasmid transfection. After 8 h, the mRNA and protein were harvested for subsequent experiments.
+ Open protocol
+ Expand
8

Kinase Inhibitor Screening Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ruxolitinib, fedratinib, pacritinib, itacitinib, midostaurin, and quizartinib were purchased from Selleck Chemicals (Houston, TX). Momelotinib was purchased from ChemieTek (Indiapolis, IN). Etomoxir was purchased from Millipore Sigma (Burlington, MA). Human TPO and murine IL-3 were purchased from Peprotech (Rocky Hill, NJ). Protein Transport Inhibitor Cocktail (500X) was purchased from ThermoFisher.
Immunobloting antibodies were used as follows: pSTAT3
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!