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11 protocols using rabbit anti myc antibody

1

Detecting Vac17 Ubiquitylation in Yeast

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To detect ubiquitylated Vac17, pVT102U vectors encoding Vac17-GFP and vac17-S222A-GFP were transformed into a vac17Δ or dma1Δ dma2Δ vac17Δ mutant strain. A plasmid encoding Myc-ubiquitin driven by a CUP1 promoter and the pRS413-myo2-D1297N plasmid were cotransformed into the same strain. Myc-ubiquitin expression was induced with 100 µM CuCl2. GFP fusion proteins were immunoprecipitated as described in the Immunoprecipitation experiments section and analyzed via immunoblotting using rabbit anti-GFP (Abcam) and rabbit anti-myc antibodies (1:2,000; Cell Signaling Technology).
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2

Detecting Ubiquitylated Vac17 in Yeast

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To detect ubiquitylated Vac17, pVT102U-Vac17-GFP was transformed into vac17∆, dma1∆dma2∆vac17∆, yck3∆vac17∆ or vps41∆vac17∆ mutant strains. pVT102U-Vac17 was transformed into vac17∆ as a no-GFP control. A plasmid encoding Myc-Ub driven by a CUP1 promoter was co-transformed into the same strains. Myc-Ub expression was induced with 100 μM CuCl2. GFP fusion proteins were immunoprecipitated as described above and analyzed via immunoblot using rabbit anti-GFP (Abcam), and rabbit anti-Myc antibodies (1:2,000; Cell Signaling).
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3

Visualizing Surface FasII Expression in S2R+ Cells

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S2R+ cells transfected with the pAc-Myc-fasII construct with or without mical-like dsRNA were incubated for 72 h and then treated with 100 μg/ml cycloheximide for 5 h to inhibit protein synthesis. To visualize surface FasII molecules, the cells were incubated with rabbit anti-Myc antibody (Cell Signaling, USA; 1:100) in culture medium for 1 h at 4°C and then fixed for 20 min with 4% formaldehyde in PBS. After washing three times with PBS, cells were incubated with Cy3-conjugated donkey anti-rabbit secondary antibody (Jackson ImmunoResearch Laboratories, USA; 1:200) for 30 min. To visualize the total pool of FasII, the same cells were then permeabilized with 0.2% Triton X-100 in PBS for 10 min and sequentially incubated with mouse anti-FasII antibody (DSHB, USA; 1:50) for 1 h and FITC-conjugated donkey anti-mouse secondary antibody (Jackson ImmunoResearch Laboratories, USA; 1:200) for 30 min. S2R+ cells showed no detectable levels of endogenous FasII based on anti-FasII immunostaining. Images of immunostained cells were acquired using a LSM 700 laser-scanning confocal microscope (Carl Zeiss, Germany). Images were processed using the ZEN imaging software. To quantify surface FasII expression, the fluorescence intensity of surface Myc-FasII (red) was normalized to the total Myc-FasII (green) fluorescence intensity.
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4

Multiparametric Flow Cytometry Analysis

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Flow cytometry data was acquired on a FACSVerse using FACSuite software or FACSCanto, or LSR II Fortessa with FACS DIVA software (BD Biosciences). Data was analysed using Flowjo software version 9.9.6 (Treestar).
For cell surface staining antibodies conjugated to BV421, BV510, FITC, PE, PerCPCy5.5, PECy7, APC, and APCeF780 were obtained from BD Biosciences, eBioscience or Biolegend. Fc receptors were blocked using Fc block (BD Biosciences). Antibody clones were as follows: CD4 (RM4-5), CD8 (53–6.7), CD11b (M1/70), CD25 (7D4), CD44 (IM7), CD45.1 (A20), CD45.2 (104), CD62L (MEL-14), CD69 (H1.2F), TCRbeta (H57-597), Thy1.2 (53–2.1), B220 (RA3-6B2), NK1.1 (PK136).
For Myc intracellular staining, cells were fixed and permeabilised overnight in PBS 1% FBS 0.5% PFA 0.2% Tween-20. Fix/perm was washed off and cells were stained with 1:200 rabbit anti-Myc antibody (Cell Signalling Technologies, clone D84C12, cat#5605S) for 1 hr at room temperature followed by 1:1000 anti-rabbit IgG (H+L) F(ab’)2 AlexFluor647 secondary antibody (Cell Signalling Technologies, cat#4414S) for 1 hr at room temperature.
For IFNγ and Granzyme B intracellular staining cells were fixed and permeabilised using eBioscience Intracellular Fixation and Permeabilisation kit (eBioscience) as per manufacturer instructions. Cells were stained with anti-IFNγ (XMG1.2) and anti-Granzyme B (NGZB) at 1:100 and 1:200 respectively.
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5

Antibody Characterization for Cell Signaling

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Rabbit anti-ACAT2 (1:1000) (ab131215) and rabbit anti-P21 (1:1000) (ab109520) were purchased from Abcam. Rabbit anti-SETD7 antibody(1:1000) (24840-1-AP), rabbit anti-P16-INK4A(1:1000) (10883-1-AP), rabbit anti-P27 (1:1000)(25614-1-AP), rabbit anti-Cyclin B1 (1:1000)(55004-1-AP), rabbit anti-Cyclin E1(1:1000)(11554-1-AP), mouse anti-Cyclin D1(1:1000)(60186-1-Ig), rabbit anti-MCM2(1:1000)(10513-1-AP), rabbit anti-Cortactin (1:400)(11381-1-AP) and rabbit anti-SMA (1:1000)(14395-1-AP), mouse anti-Vimentin(1:4000)(60330-1-Ig) were purchased from Proteintech. Rabbit anti-Snail2 (1:1000) (121235) was purchased from Brickell Biotech, Inc. Antibodies against YAP1(1:1000) (A1002), TAZ (1:1000) (A23034), TEAD1(1:1000) (A5218) were purchased from AB clonal. Rabbit anti-vinculin (1:1000) (E1E9V), rabbit anti-flag antibody (1:1000) (2272S), rabbit anti-myc antibody (1:1000) (14793S), rabbit anti-p53 (7F5) (1:1000)(2527S), rabbit anti-E-Cadherin (24E10) (1:1000)(3195S), rabbit anti-N-Cadherin (D4R1H) XP®(1:1000)(13116S) and mouse anti-ubiquitin (1:1000) (#3936) were purchased from Cell Signalling Technology.
MG132 (HY-13259), Cycloheximide (CHX) (HY-12320) and Cell Counting Kit-8 (CCK-8, HY-K0301) were purchased from MedChemExpress (Shanghai, NJ, USA).
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6

Analyzing MYC Protein Stability in HEK293T Cells

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Protein stability assays were performed according to established methods54 (link). In brief, HEK293T cells were transfected using Xtreme-Gene (Roche 6366546001) following the manufacturer's instructions. After transfection, cells were incubated for 48 h in DMEM media supplemented with 10% FBS, then were treated with 100 μg/ml cycloheximide (2112, Cell Signaling) in DMEM media with 10% FBS. At the indicated times. 100 μl of 2X SDS-PAGE sample buffer was added and the cells were scraped from the wells, boiled for 5 min, then cell lysates were stored at −80 °C. After all lysates were collected, each sample was loaded onto a 10% SDS-PAGE gel and then analysed by western blotting with rabbit anti-MYC antibody (5605, Cell Signaling, 1:1,000) to monitor MYC protein level. Protein expression was quantified from the western blot using GelQuant software. For analysis, MYC levels were normalized to tubulin protein levels (mouse, T-5326, Sigma, 1:2,000). Assays were performed three times.
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7

Immunoblot Analysis of Protein Expression

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RAW264.7 cells were lysed in cold RIPA buffer supplemented with protease inhibitors and PMSF following the manufacturer's guidelines. 30 μg proteins were subjected to electrophoresis in a 12% polyacrylamide gel and then transblotted onto a PVDF membrane followed by blocking with 5% nonfat milk solution. Rabbit anti-Myc antibody, rabbit anti-C/EBPδ antibody, rabbit anti-GAPDH antibody (Cell Signaling, Danvers, MA, USA), and rabbit anti-SOCS3 antibody (Proteintech, Wuhan, China) were applied, followed by a HRP-conjugated donkey anti-rabbit secondary IgG (GE Healthcare, Piscataway, NJ, USA). Immunoreactivity was visualized using enhanced chemiluminescence technique according to the manufacturer's direction (Thermo Fisher Scientific, Rockford, IL, USA).
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8

Immunofluorescence Staining of SARS-CoV-2 Proteins

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All antibodies were diluted in PBS with 1% skimmed milk. Human monoclonal antibodies against SARS-CoV-2 S (S2 subunit) were kindly provided by Florian Klein, University of Cologne (Köln, Germany) (HbnC5t1p1_B10, HbnC5t1p1_E5). We stained cis-Golgi compartments with a monoclonal mouse anti-GM130 antibody (BD Bioscience, #610822, dilution 1:5) and ERGIC with a monoclonal mouse anti-LMAN1 antibody (Invitrogen, #PA1-074, dilution 1:50). Myc-tagged Rab1A and Rab1B proteins were stained with a rabbit anti-Myc antibody (Cell Signaling, #2272S, dilution 1:50 for immunofluorescence assays (IFAs) and 1:250 for Western blot). Endogenous tubulin was stained with a monoclonal antibody from Sigma-Aldrich (#T9026, dilution 1:500). Alexa Fluor-labeled secondary antibodies were purchased from Invitrogen (Anti-human-Alexa Fluor 488, #A-11013; anti-mouse-Alexa Fluor 568, #A-11004; anti-mouse-Alexa Fluor 594, #A-11032; anti-rabbit-Alexa Fluor 594, #A-11012; anti-rabbit-Alexa Fluor 647, #A27040, secondary antibodies were diluted 1:400). For Western blot analyses, following HRP-coupled secondary antibodies were used: Anti-human (Invitrogen, Waltham, MA, USA, #PA1-28587, dilution 1:3000), anti-rabbit (Dianova, Geneva, Switzerland, #711-036-152, dilution 1:40,000) and anti-mouse (Dako, Glostrup, Denmark, #P044701-2 dilution 1:40,000).
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9

Characterizing Piezo Protein Expression

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pUAST-attB-piezo-Myc-FLAG constructs contain an intracellular C-terminal FLAG tag and an extracellular Myc tag inserted at different positions. Piezo-901Myc, the equivalent of mPiezo1-897Myc, was used as a control to show wild-type Piezo expression (Coste et al., 2015 (link); Saotome et al., 2018 (link)). S2 cells were co-transfected with these Piezo constructs and Actin-GAL4 using FuGENE HD transfection Reagent (Promega). After 48 hours, transfected cells were incubated with rabbit anti-Myc antibody (1:250; Cell Signaling) and mouse anti-FLAG M2 antibody (1:200; Sigma-Aldrich) either before or after 4% PFA fixation and permeabilization with 0.3% Triton in PBS for non-permeabilized and permeabilized condition, respectively. Cells were then washed with PBS, incubated with secondary antibodies, and imaged.
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10

Mutant TUBB1 Characterization in Thyroid Cells

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We used the phumanTUBB1‐tagged Myc vector described by Kunishima et al (2009). Mutant P160L‐TUBB1 was generated using a PCR‐based site‐directed mutagenesis method as described previously, using the Stratagene QuikchangeVR Kit (Agilent Technologies; Carré et al, 2007). Nthy (Nthy‐ori 3.1; given by Corinne Dupuy) immortalized human thyroid‐cell lines were cultured as previously described and used from passage 12 (Lemoine et al, 1989). The Nthy cells were plated at 0.4 × 105/well on poly‐l‐lysine‐coated slides in 12‐well plates 24 h before transfection then transfected with 500 ng of vectors containing wild‐type or P160L mutant TUBB1 using XtremeGENE‐HP‐DNA, as recommended by the manufacturer (Roche Applied Science, Penzberg, Germany). After 24 h, cells were used for immunofluorescence as already described (Bourg et al, 2015). The cells were washed with pre‐warmed PHEM buffer; fixed with 4% PFA, 0.2% glutaraldehyde and 0.5% Triton; and permeabilized with PBS‐Triton 0.1%. Immunostaining was performed with rabbit anti‐Myc antibody (# 2272, 1:500, Cell Signaling Technology) and mouse anti‐α‐tubulin (DM1A, # T9026, 1:1,000, Sigma‐Aldrich, Saint‐Louis, MI, USA) then with Alexa Fluor 647 goat anti‐rabbit and Alexa Fluor 555 goat anti‐mouse antibodies (1:400, Thermo Fisher Scientific).
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