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8 protocols using stemmacs ipsc brew xf medium

1

Differentiation of iPSCs to Hepatoblasts

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iPSCs were differentiated into HEPs following previous protocols22 (link),23 with modification as follows: iPSCs were replated onto Matrigel-coated plates at 0.8 × 105 cells/cm2 in StemMACS iPSC-Brew XF medium (Miltenyi Biotec) with 10 μmol/L Y-27632 (Selleck Chemicals). After 1 day, the medium was changed to RPMI-1640 (Lonza) containing 50 ng/mL Activin A (PeproTech, Rocky Hill, NJ), 0.5 mg/mL bovine serum albumin (BSA) (Sigma-Aldrich, St. Louis, MO), B27 supplement (Gibco, Grand Island, NY), and 0.5 mmol/L sodium butylate (Sigma). The concentration of sodium butylate was reduced to 0.1 mmol/L for 4 days to induce definitive endoderm differentiation. For HB induction, the definitive endoderm was cultured in RPMI-1640 (Lonza) supplemented with 10 ng/mL HGF (PeproTech) and 10 ng/mL FGF4 (PeproTech), 0.5 mg/mL BSA (Sigma-Aldrich), and B27 supplement (Gibco) for 5 days. HB stage cells were then cultured in Hepatocyte Culture Medium (without epidermal growth factor (EGF) supplement; Lonza) with 10 ng/mL HGF, 10 ng/mL OSM (PeproTech), and 0.1 mmol/L dexamethasone (Dex) for final differentiation.
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2

Reprogramming PBMCs to iPSCs

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Peripheral blood mononuclear cells (PBMCs) were isolated from patients’ blood by PercollR gradient separation. PBMCs were purified and replated as previously described (Liu et al., 2021 (link)). Briefly, PBMCs were cultured in 1 ml of Stem-Pro™-34 medium (100 ng/ml FLT3, 20 ng/ml IL-6, 20 ng/ml EPO, 20 ng/ml IL-3, and 100 ng/ml SCF). PBMCs were resuspended in 300ul of Stem-Pro™-34 medium and transduced with Sendai virus reprogramming cocktail (CytoTune®-iPSC Sendai Reprogramming Kit). After 24 h, cells were replated, and the medium was replaced every two days. On Day 7, 1 ml of supplemented StemMACS™ iPSC-Brew XF medium (Miltenyi Biotec) was added on top of Stem-Pro™-34 medium. On Day 8, the medium was replaced completely with StemMACS™ iPSC-Brew XF medium. Fresh StemMACS™ iPSC-Brew XF medium was replaced on Days 10–15 when colonies appeared.
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3

Reprogramming PBMCs to iPSCs

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Peripheral blood mononuclear cells (PBMCs) were isolated from patients’ blood by PercollR gradient separation. PBMCs were purified and replated as previously described (Liu et al., 2021 (link)). Briefly, PBMCs were cultured in 1 ml of Stem-Pro™-34 medium (100 ng/ml FLT3, 20 ng/ml IL-6, 20 ng/ml EPO, 20 ng/ml IL-3, and 100 ng/ml SCF). PBMCs were resuspended in 300ul of Stem-Pro™-34 medium and transduced with Sendai virus reprogramming cocktail (CytoTune®-iPSC Sendai Reprogramming Kit). After 24 h, cells were replated, and the medium was replaced every two days. On Day 7, 1 ml of supplemented StemMACS™ iPSC-Brew XF medium (Miltenyi Biotec) was added on top of Stem-Pro™-34 medium. On Day 8, the medium was replaced completely with StemMACS™ iPSC-Brew XF medium. Fresh StemMACS™ iPSC-Brew XF medium was replaced on Days 10–15 when colonies appeared.
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4

Characterization of DKC1 Mutant iPSCs

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Male DC patient–derived DKC1 mutant iPSCs were kindly provided by Dr. Timothy S. Olson (Children’s Hospital of Philadelphia). Every iPSC line (DKC1 A353V iPSCs, DKC1 A353V mutation–corrected iPSCs, DKC1 ΔL37 iPSCs, DKC1 ΔL37 mutation–corrected iPSCs, DKC1 A353V [AAVS1-EGFP] iPSCs and DKC1 A353V mutation–corrected [AAVS1-EGFP] iPSCs) were maintained on vitronectin (STEMCELL Technologies, Vancouver, Canada) coated plates using StemMACS iPSC-Brew XF medium (Miltenyi Biotec, Bergisch Gladbach, Germany) and passaged with 0.5 mmol/L EDTA (Invitrogen, Waltham, MA). iPSCs were cultured at 37 °C in 4% CO2 and 5% O2 and the medium was replaced every day.
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5

Optimized iPSC-MSC Differentiation Protocol

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In vitro differentiation of iPSCs from RTS individuals and unaffected family members to MSCs was performed by a defined optimized MSC differentiation protocol described previously [27 (link)]. Briefly, 80% confluent iPSCs were cultured in StemMACS iPSC-Brew XF medium (Miltenyi Biotec, 130-104-368) supplemented with 10 μM TGFβ inhibitor SB-431542 (MilliporeSigma, S4317) in Matrigel-coated plates at 37°C and 7.5% CO2 and passaged at 80–90% confluence by Accutase cell detachment solution (StemCell Technology, 07922). After 25 days in culture, cells at the edge of differentiated cell clusters became spindle-shaped. These differentiated cells were trypsinized into single cells and maintained in gelatin-coated plates using modified human ESC-MSC medium (KnockOut DMEM/F-12 supplemented with 10% KnockOut Serum Replacement, L-glutamine, non-essential amino acids, β-mercaptoethanol, 20 ng/ml bFGF2, 10ng/ml EGF, 10 μM SB-431542, and penicillin/streptomycin). The medium was changed daily. When cells reached 80–90% confluence, cells were passaged at a 1 to 3 ratio for three weeks. The MSCs were characterized by staining for MSC surface markers CD44, CD73, and CD105.
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6

Generating Human iPSCs from Erythroblasts

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Human iPSCs were generated from the HSE patient, family members as well as healthy controls by reprogramming erythroblasts via ectopic expression of a minimal set of transcription factors as previously described67 (link). Briefly, erythroblasts were amplified from PBMCs and nucleofected with episomal plasmids pCXLE-hOCT3/4-shp53-F, pCXLE-hSK, pCXLE-hUL (gifts from Shinya Yamanaka, Addgene #27077, #27080 and #27078)68 (link), plated on Matrigel-coated plates and cultured in a reprogramming medium (ReproTeSR, STEMCELL Technologies) until iPSC colonies started to appear. Human iPSC clones were then picked and lines expanded using StemMACS iPSC-Brew XF medium (Miltenyi Biotec, Bergisch Gladbach). Human iPSCs were characterized by immunofluorescence for pluripotency (expression of OCT4, TRA-1-60, and SOX2) and differentiation capacity (The three-germ layer differentiation capacity and expression of AFP, Pax6, SMA) as previously described67 (link) and following standard quality controls for iPSCs. The genomic integrity of iPSCs was assessed by G-banding karyotype. The p.R841H mutation was confirmed by the Sanger sequencing of iPSCs’ genomic DNA. Two lines per donor were used in this study. Healthy control iPSC lines (n = 3, each from a different individual) were previously described36 (link) and assessed to be WT for WWP2.
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7

Reprogramming of Human Erythroblasts to iPSCs

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Human induced pluripotent stem cells (hiPSCs) were reprogrammed, expanded, and characterized for pluripotency and differentiation capacity as described before.29 In brief, erythroblasts from three donors (age/sex: donor 1: 27/F, donor 2: 50/M, and donor 3: 49/F) were reprogrammed by nucleofection of plasmids encoding for OCT4, shRNA‐p53, SOX2, KLF4, L‐Myc, and Lin28. Human iPSCs were cultured using ReproTeSR medium (STEMCELL Technologies) and expanded using StemMACS iPSC‐Brew XF medium (Miltenyi Biotec, Bergisch Gladbach). Five hiPSC clones from three donors (donor 1: 2 clones, donor 2: 2 clones, and donor 3: 1 clone) were used in this study. For some experiments, we also used the IMR90‐4 iPSC line.30 Human iPSCs were maintained on Matrigel (Corning)‐coated plates in mTeSR1 medium (STEMCELL Technologies).
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8

Generation and Characterization of hiPSCs

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Human induced pluripotent stem cells (hiPSCs) were reprogrammed, expanded and characterized for pluripotency and differentiation capacity as described before (29 (link)). In brief, erythroblasts from three donors (age/sex: donor 1: 27/F, donor 2: 50/M, donor 3: 49/F) were reprogrammed by nucleofection of plasmids encoding for OCT4, shRNA-p53, SOX2, KLF4, L-Myc and Lin28. Human iPSCs were cultured using ReproTeSR medium (STEMCELL Technologies, Grenoble, France) and expanded using StemMACS iPSC-Brew XF medium (Miltenyi Biotec, Bergisch Gladbach, Germany). Five hiPSC clones from 3 donors (donor 1: 2 clones, donor 2: 2 clones, donor 3: 1 clone) were used in this study. For some experiments, we also used the IMR90-4 iPSC line (30 ). Human iPSCs were maintained on Matrigel (Corning)-coated plates in mTeSR1 medium (STEMCELL Technologies, Grenoble, France).
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