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4 protocols using immobiline drystrip cover fluid

1

Two-Dimensional Gel Electrophoresis Reagents

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Acrylamide and bis-Acrylamide were from SERVA (Heidelberg, Germany). Immobiline DryStrips, Pharmalyte buffer (broad pH range 3–10), Immobiline DryStrip cover fluid and Amersham CyDye DIGE Fluors (minimal dyes) for 2D-DIGE were purchased from GE Healthcare (Piscataway Township, NJ). Complete protease inhibitor cocktail was from Roche Diagnostic (Mannheim, Germany). All others chemicals were of the highest purity available and purchased from Sigma-Aldrich (St. Louis, USA).
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2

Functionalized Au NPs Enhance PCR

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A PCR master mix (DimerEraser, Takara, Shiga, Japan) containing all needed components for the PCR reaction except for the primers was used. The reaction mixture was compiled with 50 µL PCR master mix, 3 µL of every primer (300 nM final concentration), 20 µL of functionalized Au NPs (1 nmol/L in distilled nuclease free H2O), 4 µL MgCl2 (50 mM), 4 µL NaCl (400 mM), 6 µL distilled H2O and 10 µL target DNA, unless stated otherwise. The reaction mixture was covered by a layer of mineral oil (Immobiline DryStrip Cover Fluid, GE healthcare, Diegem, Belgium) to protect it from evaporation during thermocycling. The FO-PCR-MA was optimized for standard cycling conditions, first with an enzyme activation step at 95 °C (30 s), followed by 40 cycles of 30 s annealing at 53 °C (ramp speed = 5.0 °C/s), 30 sec elongation at 72 °C (ramp speed = 5.0 °C/s), and finally 5 s denaturation at 90 °C (ramp speed = 1.0 °C/s).
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3

Two-Dimensional Protein Electrophoresis

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Acrylamide and bis-Acrylamide were from SERVA (Heidelberg, Germany). Immobiline DryStrips, Pharmalyte buffer (broad pH range 3–10) and Immobiline DryStrip cover fluid were purchased from GE Healthcare (Piscataway Township, NJ). Complete protease inhibitor cocktail was from Roche Diagnostic (Mannheim, Germany), [3H]-ouabain (30 mCi/mmol, NET211001MC) from Perkin Elmer and N-glycosidase F (11 365 169 001, Roche) was from Sigma-Aldrich. All others chemicals were of highest purity available and purchased from Sigma-Aldrich (St. Louis, USA).
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4

Proteomic Analysis of PDO Buffalo Mozzarella

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Acetonitrile, formic acid, tris(hydroxymethyl) aminomethane (Tris), HCl, trichloroacetic acid, urea, dithiothreitol (DTT), bromophenol blue sodium salt, SDS, acrylamide/bis-acrylamide 30% solution (37.5% T; 1% C), ammonium bicarbonate phosphate, glycerol, iodoacetamide, acetone, Coomassie Brilliant Blue G (CBB), silver blue, and trypsin singles (Proteomics grade kit) were purchased from Sigma (St. Louis, MO) and used as received. DeStreak Rehydration Solution, immobiline DryStrip Cover Fluid, and bromophenol blue were from GE Healthcare Biosciences (Uppsala, Sweden); rennet with a strength of 1/10,000 was bought at a local market.
Sixty samples of fresh PDO buffalo mozzarella, produced in Campania, were kindly furnished by Istituto Zooprofilattico (Portici, Napoli, Italy). Ten samples obtained from Campanian factories producing buffalo mozzarella under specific PDO requirements were used as control.
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