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5 protocols using gapdh ga1r

1

Cell Cycle Regulation Mechanisms

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Palbociclib (PD-0332991, IBRANCE®), Ribociclib (LEE-011, Kiskali®), Mitotane and PNU-74654 were purchased from CliniSciences (A8316, A8641, sc-205754 and sc-258020, respectively). Palbociclib and Ribociclib 1mM stock solutions were prepared in 100% ethanol or DMSO respectively. PNU-74654 stock solution (31.2 mM) was prepared in DMSO. Anti-CDK6 (D4S8S), CDK4 (D9G3E), Phospho-Rb (9308), GSK3-β (D5C5Z), Phospho-GSK3-β (D85E12), non-phospho-β-Catenin (D13A1) were purchased from Cell Signaling Technology. The anti-β-Catenin (MA1-301) and GAPDH (GA1R) were purchased from Thermo Fischer Scientific. The anti-ɑ-Tubulin (T9026) was purchased from Sigma.
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2

Phenotypic Analysis of Hematopoietic Cells

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AIF1 (EPR16588) antibody used was purchased from Abcam (Cambridge MA). CD117 (2B8), Lineage cocktail (CD3/Gr-1/CD11b/CD45R/TER-119), SCA1 (D7), CD34 (SA376A4), CD11c (N418), MHC class II (M5/114.15.2), CD8α (53–6.7), CD11b (M1/70), F4/80 (BM8), CD45R (RA3-6B2), TCRβ (H57-597), Protein Kinase C (PKC; PKC0103), CD4 (RM4-5), CD3 (17A2), IgD (11-26c.2a), CD19 (6D5), CD24 (M1/69), PDCA1 (927), CD172α (P84), IL-7Rα (A7R34), CD135 (A2F10), and CD103 (2E7) purchased from BioLegend. RelB (C1E4), NFκB p100/P52 (D7A9K), phospho-IκBα (S32), IκBα (L35A5), phosho-p38 (M139), and p38 (D13E1) purchased from Cell Signaling Technology (Danvers MA). Phospho-ERK (M206) purchased from ECM biosciences (Versailles KY) and IRF4 (343), IRF8 (V3GYWCH), NFκB p105/50 (catalog #14-6732-81), GAPDH (GA1R), and β-actin (BA3R) from Thermo Fisher. Zbtb46 (U4-1374) purchased from BD Biosciences (San Jose CA). Live/Dead fixable dead cell stain (cat# L23101) purchased from Thermo Fisher Scientific.
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3

Immunoblotting of Synaptic Proteins

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Samples were electrophoresed on 4–20% Tris-Glycine gradient gels and transferred to nitrocellulose membrane for immunoblotting using the following antibodies:
From the Developmental Studies Hybridoma Bank: Brp (nc82) 1:50; Synapsin-1 (3C11) 1:500; Syntaxin (8C3) 1:500; Drpr (1:1 mix of 5D14:8A1) 1:400; Repo (8D12) 1:200. Other antibodies used were biotin (Bethyl Laboratories) 1:1000; FLAG (M2) (Sigma) 1:500; TH (Immunostar) 1:1000; Actin-HRP (Sigma) 1:1000; Ubiquitin (P4D1) (Cell Signaling Technology) 1:1000; GAPDH (GA1R) (ThermoFisher Scientific) 1:10,000.
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4

Whole Cell Extract Preparation and Immunoblotting

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To prepare whole cell extracts from exponentially growing cultures, cells were lysed in RIPA lysis buffer [50 mM Tris, pH 8.0; 150 mM NaCl, 5 mM EDTA (pH 8.0), 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS and protease inhibitor cocktail (Pierce)]. Lysates were cleared by centrifugation at 12,000 rpm for 15 min and the supernatant was used for Western Blotting. Antibodies for immunoblotting were: TFAM [D5C8] (Cell Signaling), Drp1 [6Z-82] (SCBT), phospho-Drp1-Ser616 [D9A1] (Cell Signaling), cyclin B1 [GNS1] (SCBT), cyclin A [BF683] (SCBT), Ran [610340] (BD Biosciences), MAP LC3β [G-9] (SCBT), Mfn1 [D-10] (SCBT), GAPDH [GA1R] (Invitrogen), Opa1 [612606] (BD Biosciences), Nrf1 [147.1] (SCBT) and Nrf2 [A-10] (SCBT). Image quantification was performed in ImageJ (version 1.53a; freely available at http://imageJ.nih.gov/ij)90 (link). Full-size membranes of Western blots from which panels in Figs. 2–5 were prepared are shown in Supplemental Fig. S5S8.
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5

Antibody Panel for Golgi Protein Analysis

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We used the following primary antibodies: mouse monoclonal antibody against mAID (clone 1E4, catalog #M214-3; MBL), FLAG-tag (M2, catalog #F3165; Sigma), GAPDH (GA1R, catalog #MA5-15738; Invitrogen), Golgin-45 (E-3, catalog #sc-515193; Santa Cruz Biotechnology), Golgin-97 (CDF4, catalog #A-21270; Invitrogen), GM130 (35/GM130, catalog #610822; BD Transduction Labs), GRASP55 (1C9A3, catalog #66627–1-lg; Proteintech), GRASP65 (D-12, catalog #sc-374423; Santa Cruz Biotechnology), p115 (4H1; Waters et al., 1992 (link)), and α-tubulin (DM1A, catalog #14–4502-80; eBioscience) and rabbit polyclonal antibodies against Golgin-84 (Beard et al., 2005 (link)), GM130 (Wei et al., 2015 (link)), GRASP55 (catalog #PTG10598-1-AP; Proteintech), GRASP65 (UT465; Wei et al., 2015 (link)), Myc-tag (A-14, catalog #sc-789; Santa Cruz Biotechnology), and p115 (catalog #130509–1-AP; Proteintech). Secondary antibodies were as follows: Alexa Fluor 488–, Alexa Fluor 555–, Alexa Fluor 594–, or Alexa Fluor 647–conjugated highly cross-absorbed goat anti-mouse IgG (H+L) or goat anti-rabbit IgG (H+L; Invitrogen), HRP-conjugated goat anti-rabbit, or goat anti-mouse IgG (Jackson ImmunoResearch).
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