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11 protocols using plan neofluar lens

1

Microscopic Analysis of Emulsion Structures

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Optical microscopy images of TW and SC double emulsions were obtained to confirm the correct formation and droplet structure of the different systems. A vertical microscope Axioskop (Carl Zeiss, Oberkochen, Germany) with a Zeiss Plan-Neofluar lens (Carl Zeiss, Göttingen, Germany) coupled to a Leica DMC 6200 pixel-shift camera (Leica Microsystems, Wetzlar, Germany) was used. Samples were prepared by depositing one drop of each emulsion on microscope slides, without using stains. Samples were observed at 40× and 100× using an open condenser and illumination (level four).
Confocal laser scanning microscopy analysis was also performed to evaluate the microstructure of the emulsion particles and their progression during the in vitro gastro-intestinal digestion assay. A droplet of each sample was placed on a microscope slide and stained with 10 µL of Nile red solution (1 mg of Nile red/mL of acetone). Fluorescence excitation and emission were measured at 488 and 523–650 nm, respectively. Then, samples were studied with a confocal multispectral TCS SP5 system (Leica Microsystems, Germany) at 20× and at 40× using a Zeiss Plan-Neofluar lens.
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2

Optical Microscopy of Double Emulsions

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Optical microscopy was used to confirm that double emulsions were achieved in both formulations (A and B). Several drops of double emulsions were placed on a crystal slice and observed in the microscope. No dye was used to stain the samples. Optical microscopy was performed with a vertical microscope Axioskop (Carl Zeiss, Oberkochen, Germany) with Zeiss Plan-Neofluar lens (Carl Zeiss, Göttingen, Germany) coupled to a Leica DMC 6200 pixel-shift camera (Leica Microsystems, Wetzlar, Germany). The samples were observed with an open condenser and level four of illumination without colour filters. The samples were studied at 40× and at 100× with the addition of a drop of immersion oil to observe at 100×.
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3

Cryostat Sectioning and Microscopy of Papaya Carotenoids

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For light microscopy observation, cryostat sections (20 μm) were obtained from papaya pulp cubes. They were frozen at −80 °C in an ultra-low-temperature freezer, fixed with ethanol 95%, and placed in a paraffin embedding station (Leica EG1160). Then, the samples were transferred to a cryostat (Leica CM1900) and mounted on a slide using a standard motorized microtome (Leica RM2155). To observe carotenoid compounds, no dye was used to stain the samples. Light microscopy was performed with a vertical microscope Axioskop (Carl Zeiss, Germany) coupled to a Leica DMC 6200 pixel shift camera (Leica Microsystems, Germany). Samples were observed with an open condenser, level 4 of illumination, and no color filters were used. The color was manually adjusted to show real-time colors (approximately 66% brightness, 46% saturation, and 0.80 gamma) using Leica Application Suite software. Samples were observed at 20× and 40× with a Zeiss Plan-Neofluar lens with the addition of an immersion oil drop. Three replicas of each sample were prepared and analyzed.
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4

Quantitative Microglial Morphology Analysis

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Microglia for Sholl analysis and other IHC assays were imaged using a 40x objective (Plan-Neofluar lens, NA 0.9) on a Zeiss Axioscope Image Z.2 with a motorized stage with Apotome, using a Hamamatsu camera and ZEN Blue software. For each condition, n = 3 or 4 mice were used. 10–20 microglia were randomly identified and selected for intactness on 2–3 coronal slices (bregma −3.5 to −4.5 mm) for Iba1+ staining in dorsal hippocampus, for a total of 75–100 microglia measured. Sholl analysis was performed using a FIJI software plugin (Ferreira et al., 2014 (link)) which measures cell branching and outgrowth through sampling at evenly spaced intervals (0.1 μm) from a designated soma center point. Sholl measurements from each microglia was averaged across the relevant condition and compared using first a two-way ANOVA between conditions, followed by a post-hoc test identifying differences in each 0.1 μm bin.
10–20 slices from n = 4 mice were selected and measured via IHC for C1q, PSD95, and GFAP stains. 14 or 15 week old mice were used. For C1q and PSD95, puncta larger than 0.8 μm3 were excluded. Colocalization was established using FIJI's JaCOP (Bolte and Cordelières, 2006 (link)) program's object based analysis with standardized parameters for all images.
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5

Visualizing Microstructure Changes in Encapsulated OPD Extracts

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Confocal laser scanning microscopy (CLSM) was used to observe the microstructure of the formulations with encapsulated OPD extracts before (control) and during the in vitro gastro-intestinal digestion process with lipase enzyme (oral, gastric, and intestinal phases). To stain the droplet structure (oil globules), 1 mL of control and each digestion phase were placed on a crystal slice. The samples were dyed by the addition of 10 µL Nile red solution (1 mg/mL in acetone). The excitation and emission for the fluorescence were measured at 488 and 523–650 nm, respectively. The samples were studied with a confocal multispectral TCS SP5 system (Leica Microsystems, Germany) at 20× and at 40× using a Zeiss Plan-Neofluar lens.
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6

Quantitative Analysis of Apoptosis and Angiogenesis

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H&E staining was performed on 4% paraformaldehyde fixed and paraffin embedded tumor sections (5 μm thick). Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) staining was executed according to the manufacturer’s recommendations using the ApopTag Peroxidase In Situ Apoptosis Detection kit (Millipore). Bright field images were taken on a Zeiss wide-field Axioplan microscope equipped with a 40×/1.3 oil Plan-NEOFLUAR lens (Carl Zeiss Microimaging) and SPOT Insight QE color camera (Diagnostic Instruments). TUNEL optical density was quantitated by taking the ratio of TUNEL positive staining to the total tissue area. CD31 (1:100, Abcam) immunofluorescence staining was performed with antigen retrieval using 20 mg/kg proteinase K. An anti-rat Alexa Fluor 647 secondary antibody was used (1:300, Life Technologies). Images were taken with an Axiovert 200M microscope equipped with a 20x/0.8 Plan-APOCHROMAT lens (Carl Zeiss Microimaging) and ORCA-AG camera (Hamamatsu Photonics) using Micro-Manager software[22 ]. CD31 blood vessel density was quantitated by taking the ratio of CD31-red positive staining to the total DAPI-blue positive staining.
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7

Live imaging of cell division dynamics

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Immunofluorescence images were acquired at room temperature using ZEN 2011 software (Zeiss) on an LSM780 microscope (Zeiss) equipped with a GaAsP detector and 25×/0.8 Plan Apochromat or 40×/1.4 enhanced chemiluminescence Plan Apochromat oil differential interference contrast or 40×/1.3 enhanced chemiluminescence Plan-Neofluar oil differential interference contrast objectives (Zeiss).
In vitro live imaging of cultured cells was performed using an UltraView Vox spinning-disk confocal system (PerkinElmer) installed on an AxioObserver Z1 microscope (Zeiss). Images were recorded with an Hamamatsu electron-multiplying charge-coupled device 9100-13 camera using 40×/1.3 enhanced chemiluminescence Plan Neofluar lens (Zeiss). Acquisition of video sequences was done with the Volocity 3D image software (PerkinElmer). Multiple positions were acquired simultaneously. At each position, z stacks were captured every 3 min. Collected images were deconvolved using Huygens deconvolution suite (SVI). Nuclei volumes and cell cycle times were automatically analyzed using Definiens as described previously (Homem et al., 2013 (link), 2014 (link)).
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8

Microstructural Analysis of Papaya Pulp

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Microstructural analysis was also performed using confocal laser scanning microscopy (CLSM). To observe cell walls in papaya fruit and their possible autofluorescence, microtome-cut sections of papaya pulp were placed on a slide and stained with 0.1% calcofluor white M2R (w/v) solution during 5 min. The excitation and emission of the dye were measured at 405 and 430 nm, respectively. To examine the presence of autofluorescence in papaya cells, unstained sections were observed through a broad range (405–633) of excitation and band-pass emission filter. This analysis was achieved using a Confocal multispectral TCS SP8 system (Leica Microsystems, Germany) at 20× and 40× with a Zeiss Plan-Neofluar lens. At least three replicas of each sample were prepared and analyzed.
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9

Apoptosis Detection in Nerve Fibers

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Teased nerve fibers mounted on slides were treated with PBS containing 4% Paraformaldehyde for 15 min, discarded with fixative solution and washed with PBS for 3 times. Next, slides were incubated with 0.1% sodium citrate buffer solution and 0.1% Trion × 100 for 2 min on ice. Rinse slides three times with PBS and add TUNEL reaction mixture (Roche Molecular Biochemicals) on nerve fibers for 60 min in the dark. Rinse slides three times with PBS. Finally, slides were incubated with PBS counterstained with 4′6-diamino-2-phenyl indole (DAPI; Vectashield, Vector Laboratories) to visualize nuclei. DAPI staining was used for enumeration and identification of nuclei. The slides were visualized using a 20 × /0.50 Plan-Neofluar lens (Carl Zeiss). The TUNEL labeled red and DAPI labeled blue were positive at the same time as apoptosis.
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10

Immunofluorescence Staining of Fixed Cells

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According to previously described protocol [18 (link)], cells were fixed in 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS) for 30 min and then permeabilized with methanol for 10 min at room temperature. After washing with PBS, the fixed cells were incubated with blocking buffer (1% bovine serum albumin (BSA) and 0.1% Triton X-100 in PBS) for 3 h at 4 °C followed by incubation with a primary antibody (1:300 dilution in blocking buffer) overnight at 4 °C. Methanol and Triton X-100 were not used for the ANXA2 externalization assay. The cells were then incubated with a fluorescein isothiocyanate (FITC)- or Cy3- conjugated secondary antibody (1:500 dilution in blocking buffer, Chemicon International Inc., Temecula, CA, USA). The nuclei were visualized with Hoechst 33342 (Molecular Probes, Eugene, OR, USA). Images were captured with a BZ-8000 microscope (Keyence, Osaka, Japan) with a 20× Plan APO lens (Nikon, Tokyo, Japan) or with a LSM 510 META confocal laser microscope with a 40× Plan-Neofluar lens or a 63× Plan-Apochromat lens (Carl Zeiss, Oberkochen, Germany).
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