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16 protocols using sephadex g 25 column

1

Radiolabeled Insulin Tracer Protocol

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The homogeneous mono [125I A14] Insulin used as a tracer for both radiometric methods, RBA and RIA, was produced using recombinant human insulin (HumulinC from Eli Lilly, Indiana, USA) devoid of preservative substances by chromatography on a Sephadex G25 column (Amersham Biosciences, New Jersey, USA). The labeling and HPLC purification steps were carried out following as indicated by Linde et al. [3] (link) and Jørgensen et al. [4] , respectively. Specific radioactivity of roughly 300–380 μCi/μg was routinely achieved.
The concentration of tracer in both, RBA and RIA, was 5.8 × 10−11, calculated from an activity of 20,000 cpm; Relative mass of insulin, 5808 Da; Final incubation volume, 0,12 mL; Gamma counter efficiency, 70%; Specific activity of fresh insulin tracer, 380 μCi/μg.
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2

Protein Separation via Size-Exclusion Chromatography

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For SEC separation, 5 g of hydrolyzed protein was mixed with 35 mL of HCl (0.01 N). Then, three volumes of ethanol were added to this solution and stored at 4 °C during the night for deproteinization. The mixture was centrifuged at 12,000 rpm for 20 min at 4 °C to remove the precipitated proteins, and ethanol was evaporated using a rotary evaporator. Samples were lyophilized overnight (SCANVAC, Labogene ApS, Denmark). Before injection into the SEC column, 1 g of the dried sample was resuspended in 10 mL of 0.01 N HCl and filtered through a 0.45 μm syringe filter to remove non-soluble impurities. A total of 5 mL of the sample was injected on the Sephadex G25 column (2.5 × 65 cm) (Amersham Biosciences, Uppsala, Sweden). The separation process was performed using a flow rate of 15 mL per hour of degassed 0.01 N HCl, and 5 mL peptide fractions were collected using an automatic collector. Finally, the absorbance was measured at 254 and 280 nm in a Cary 60 UV-Vis spectrophotometer (Agilent Technologies, Palo Alto, CA, USA), and the biological activities were also assayed in all fractions [24 (link),25 (link)].
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3

Cytochrome c Oxidase Activity Assay

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After each treatment, the incubation medium was removed and cells were washed with PBS and lysed with 200 μL of 0.1 M potassium phosphate buffer pH 7.5 which contained 0.5% Triton X-100. The lysed cells were centrifuged at 13,000 rpm for 5 min before collecting supernatants. Reduced cytochrome c (7 mg) was dissolved in 1 mL of 0.1 M of potassium phosphate buffer pH 7.5 and dithionite was added to ensure cytochrome reduction. Excess dithionite was removed by passing the cytochrome c solution through a Sephadex G-25 column equilibrated with the buffer (Amersham Bioscience, Arlington, MA, USA). The eluyent was taken and adjusted to an optic density of 0.7 absorbance. The extract was added to 1 mL of this solution and absorbance measured at 550 nm. Activity was expressed as OD/10 min/mg protein.
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4

Purification and Characterization of ACE-Inhibitory Peptides

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The hydrolysate of PX-5G had the highest ACE inhibition and was purified using Sephadex (G-25, 1.6 × 90 cm2; Amersham Pharmacia Biotech AB, Uppsala, Sweden) in a gel filtration process and 0.02% NaN3 in deionized water was used for equilibration. Three hundred milligram of hydrolysate in 10 mL of deionized water was filtered using a 5-kDa MWCO membrane and 2.0 mL of filtrate was injected into the Sephadex G-25 column (Amersham Pharmacia Biotech AB, Uppsala, Sweden) and eluted with 0.02% NaN3 at 0.5 mL/min. 5-mL fractions were collected, and the absorbance of each fraction was determined at 280 nm. The standards (Bacitracin, penta-L-phenylalanine and tryptophan) used for calibration of the Sephadex G-25 and their molecular weight were 1422 Da, 753.9 and 204.2 Da, respectively.
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5

Quantitative DNA PARylation Assay

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The standard reaction mixture (10 μl) for a DNA PARylation assay contained 20 nM [32P]labelled oligonucleotide, 50 nM PARP1 or PARP2, 1 mM NAD+, 20 mM HEPES-KOH, pH 7.6, 50 mM KCl, 5 mM MgCl2, 1 mM DTT and 100 μg.ml−1 BSA; the mixture was incubated for 30 min at 37°C, unless otherwise stated. After reaction, the samples were incubated in the presence of 50 ng/μl proteinase K and 0.15% SDS for 30 min at 50°C followed by incubation for 3 min at 95°C. The samples were desalted on a Sephadex G-25 column (Amersham Biosciences) equilibrated in 7.5 M urea, and then the products were analysed by electrophoresis in denaturing 20% (w/v) polyacrylamide gels (PAGE, 7 M Urea, 0.5x TBE, 42°C). A wet gel was wrapped in a plastic drape, then exposed to a Storage Fuji FLA-3000 Phosphor Screen, which was then scanned using Typhoon FLA 9500 and digital images were obtained and quantified using FUJI Image Gauge V3.12 software.
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6

Cytochrome c Oxidase Activity Assay

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Reduction of cytochrome c and activity assay of complex IV (cytochrome c oxidase) was performed as described previously.56 (link) Cytochrome c was reduced by addition of a few crystals of sodium dithionite, and reduction of cytochrome c was confirmed by change in color of the solution from blood red to pink. Purification of reduced cytochrome c was performed by desalting using a Sephadex G-25 column (Amersham, Uppsala, Sweden). For the activity assay of complex IV, SM samples (0.1 mg protein) were resuspended in isolation buffer and incubated with 0.3 mM reduced cytochrome c. The rate of oxidation of cytochrome c was followed at 30°C as decrease in absorption at 550 nm.46 (link) Reaction rate was calculated as µmol cytochrome c oxidized per min per mg protein and is represented with respect to rate of SM from Ctrl animals.
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7

Radioactive PARylation Assay Protocol

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The standard DNA PARylation assay (10 μl) was performed by incubating 20 nM [32P]-labeled oligonucleotide, 250 nM atPARP1 or atPARP2, and 1 mM NAD+, in ADPR buffer [20 mM HEPES-KOH pH 7.6, 50 mM KCl, 5 mM MgCl2, 1 mM DTT, and μg•ml–1 bovine serum albumin (BSA)], for 30 min at 37°C, unless otherwise stated. After the reaction, the samples were incubated in the presence of 50 μg•ml–1 proteinase K and 0.15% SDS for 30 min at 50°C followed by incubation for 3 min at 95°C. The samples were desalted on a Sephadex G-25 column (Amersham Biosciences) equilibrated in 7.5 M urea, and then the products were analyzed by electrophoresis in the denaturing 20% (w/v) polyacrylamide gel (PAGE, 7 M urea, 0.5 × TBE, 42°C). A wet gel was wrapped in a plastic drape, then exposed to a Storage Fuji FLA-3000 Phosphor Screen, which was then scanned using Typhoon FLA 9500, and digital images were obtained and quantified using FUJI Image Gauge V3.12 software.
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8

Size Exclusion Chromatography of Listeria Inhibitors

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The size exclusion chromatography was done using a previously equilibrated Sephadex G-25 column (2.5 × 65 cm, Amersham Biosciences, Uppsala, Sweden) with 0.01 N HCl at 4 ºC and a flow rate of 15 mL/h. The collection of fractions (5 mL) was done using an automatic fraction collector and their absorbance was measured at 214, 254 and 280 nm (Agilent Cary 60 UV-Vis spectrophotometer, Agilent Technologies, Palo Alto, CA, USA). All fractions were assayed for L. monocytogenes inhibitory activities. Fractions
showing the highest activities were put together freeze dried and dissolved in 1 mL of bidistilled water. A saline solution was used as negative control.
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9

Peptide Fractionation via SEC

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The hydrolysate showing the best ACE-inhibitory and antioxidant activity was deproteinised to be further analysed using size-exclusion chromatography (SEC). In order to deproteinise the hydrolysate, 4 g of lyophilized hydrolysate was dissolved in 20 ml of 0.01N HCL and mixed by magnetic stirrer. The solution was mixed with 3 volume of ethanol and maintained in cold (4-5 • C) for 20 h. Then, the mixture was centrifuged (12000 g for 20 min at 4 • C), and the supernatant was lyophilized after removing the ethanol by using a rotary evaporator. In the deproteinised hydrolysate, a Sephadex G-25 column (2.5 × 65 cm, Amersham Biosciences, Uppsala, Sweden) was used to fractionate the peptides according to their molecular mass. 100 mg of the freezedried deproteinised hydrolysate was dissolved in 5 mL of bidistilled water, filtered using a 0.2 µm filter and then eluted with filtered and degassed bidistilled water at a flow rate of 15 mL/h.
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10

Fractionation of Peptide Extracts

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Extracts were fractionated according to the molecular mass of peptides using sizeexclusion chromatography on a Sephadex G25 column (2.5 x 65 cm; Amersham Biosciences, Uppsala, Sweden). For that, 5 mL of each extract was injected on the column and the separation was performed using 0.01 N HCl as mobile phase at a flow rate of 15 mL/h in a cool room. Fractions of 5 mL were collected using an automatic fraction collector and then monitored at 214 nm using an UV spectrophotometer (Agilent 8453, Agilent Technologies, Palo Alto, CA, USA). Finally, fractions including elution volumes from 125 to 160 mL, corresponding to the highest molecular weight peptides, were pooled and divided in aliquots of 100 L that were lyophilised for the following analysis.
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