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4 protocols using cleaved parp asp214 d64e10

1

Antibody Characterization and Cell Transfection

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The p53 (DO-1), PUMAα (B-6), and vinculin (7F9) antibodies were from Santa Cruz Biotechnology (Dallas, TX, USA). The antibodies against DR5 (D4E9), cleaved caspase 3 (D175) and cleaved PARP (Asp214) (D64E10) were from Cell Signaling Technology (Danvers, MA, USA). The HA tag (clone 3F10) and β-actin (clone AC-15) antibodies were from Roche Applied Science (Penzberg, Germany) and Sigma-Aldrich (St. Louis, MO, USA), respectively. ECRG2 antibody was generated in our laboratory as previously described13 (link). The peroxidase-conjugated horse anti-mouse, goat anti-rat, and goat anti-rabbit antibodies were from Vector Laboratories (Burlingame, CA, USA). The cells were transfected using PolyJet or LipoJet reagents (SignaGen Laboratories, Rockville, MD, USA). The plasmid subcloning was performed using the restriction endonucleases from New England BioLabs (Ipswich, MA, USA). Etoposide, doxycycline, thapsigargin, and melphalan were from Sigma-Aldrich (St. Louis, MO, USA), and sulindac sulfide was provided by Merck (Rahway, NJ, USA). The cells growing in logarithmic phase were exposed to UVC as described previously50 (link), except XL-1500 UV crosslinker (Spectronics, Westbury, NY, USA) was used as a source of UV radiation.
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2

Evaluation of Autophagy Markers in Tg-Treated Cells

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Cells were harvested after 30 h of treatment with Tg, unless otherwise stated. Preparation of whole-cell lysates, SDS-PAGE, and immunoblot analysis were performed as described previously [33 (link)]. The following antibodies were used: alpha-tubulin (Abcam, ab7291), ATG5 (Cell Signaling Technology 2630), ATF4 (Cell Signaling Technology 11815), Bip/Grp78 (Cell Signaling Technology 3177), Caspase-3 (8G10) (Cell Signaling Technology 9665), Caspase-8 (1C12) (Cell Signaling Technology 9746), CHOP (Cell Signaling Technology 2895), Cleaved PARP (Asp214) (D64E10) (Cell Signaling Technology 5625), DR5 (Cell Signaling Technology 8074), FADD (G-4) (Santa Cruz sc-271748), FIP200 (Proteintech 17250–1-AP, GABARAP (Proteintech PM037), GABARAPL1 (Abcam ab86497), GABARAPL2 (Proteintech PM038), p-JNK (Cell Signaling Technology 9251), JNK (Cell Signaling Technology 9252), LC3B (Cell Signaling Technology 2775), PERK (Cell Signaling Technology 5683), XBP1s (BioLegend 647502).
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3

Western Blot Analysis of Cell Signaling

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Protein extraction and Western blot analysis were performed as previously described [52 (link)]. The following primary antibodies were used: FoxM1 (D12D5), Cleaved PARP (Asp214) (D64E10), RhoA (67B9), Rac1/2/3, Cdc42 (11A11) (Cell Signaling Technology, Inc., Danvers, MA, USA), T7-tag monoclonal antibody (Merck KGaA, Darmstadt, Germany), GAPDH (Trevigen, Inc., Gaithersburg, MD, USA). Donkey anti-rabbit IgG-HRP (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) and anti-mouse IgG-HRP (Promega Corp., Madison, WI, USA) were used as a secondary antibody.
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4

Antibody-based Protein Analysis Protocol

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Specific antibodies against KLF4 (D1F2, 1:1,000), PARP (46D11, 1:1,000), Cleaved PARP (Asp214) (D64E10, 1:1,000), FLAG (D6W5B, 1:1,000), Phospho‐Histone H2A.X (Ser139, 1:1,000), 53BP1 (P550, 1:1,000), and BRCA1 (A8X9F, 1:1,000) were purchased from cell signaling (Beverly, MA). KLF4 (H‐180, 1:1,000), KLF4 (F‐8, 1:1,000), PARP1 (H‐300, 1:1,000), HA (F‐7, 1:1,000), and Myc tag (9E10, 1:1,000) were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Antibodies against β‐actin (AC‐15, 1:5,000) and FLAG (M2, 1:2,000) were from Sigma‐Aldrich. Antibodies against PAR were purchased from Trevigen (4336‐BPC‐100, 1:1,000). The anti‐FLAG M2 affinity gel was from Sigma‐Aldrich. The PARP1 inhibitor niraparib, olaparib, and rucaparib were purchased from Selleckchem (Houston, TA). Puromycin and blasticidin were from Invitrogen. Cycloheximide was from Sigma. The anti‐cancer compound library was purchased from Selleckchem. The compounds ABT‐263 and dasatinib used in animal model were purchased from Selleckchem.
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