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6 protocols using anti p65

1

HUVEC Protein Extraction and Analysis

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Protein was extracted and analyzed using an established method [26 (link)]. In brief, the total protein from HUVECs was collected by RIPA lysis buffer (R0010; Solarbio, Beijing, China) containing Phenylmethanesulfonyl fluoride (PMSF; Solarbio, Beijing, China). Use the BCA Protein Assay Kit (Beyotime Biotechnology, Shanghai, China) to measure the concentration of protein. About 10 μg protein samples from each group were separated by 10% SDS-PAGE. Then, they transferred to nitrocellulose membranes. Utilize 5% non-fat milk dissolved in Tris-buffered saline containing Tween-20 to block the blots before applying primary antibodies overnight at 4°C. Anti-VE-Cadherin, anti-P-VE-Cadherin, anti-Occludin, anti-p65, anti-p-p65, anti-IκB, anti-p-IκB, and anti-GAPDH (Affinity) antibodies were used as primary antibodies (Table 2).
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2

Western Blot Analysis of Inflammatory Markers

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Ice-cold lysis buffer (Beyotime) was utilized to lyse HPAEpiCs. The proteins were separated and transferred onto polyvinylidene fluoride membrane, which was blocked in nonfat dried milk. Subsequently, the polyvinylidene fluoride membranes were incubated with the following primary antibodies: anti-inducible NOS (anti-iNOS; Cat#MA5-17139; 1:1000; Thermo Fisher, Waltham, MA, USA), anti-cyclooxygenase-2 (anti-COX2; Cat#MA5-14568; 1:1000; Thermo Fisher), anti-p-p65 (Cat#AF2006; 1:2000; Affinity, Nanjing, China), anti-p65 (Cat#AF5006; 1:1000; Affinity) and anti-GAPDH (Cat#MA1-16757; 1:1000; Thermo Fisher). After being washed with PBS, secondary antibodies (Cat#A32731/A32723) were used to incubate the membranes. At last, immunoreactive bands were visualized using eyoECL Plus (Beyotime).
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3

Protein Expression Analysis in MC3T3-E1 Cells

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Total protein in MC3T3-E1 cells was extracted, and the concentrations of protein were detected by a BCA kit (Beyotime). 30 µg of each sample was subjected to 10–12% SDS-PAGE for separation, and the blots were then transferred onto PVDF membranes. After blocking with 5% skim milk in TBS for 1 h, the primary antibodies, including anti-Bcl-2 (1:1000 dilution; Affinity), anti-cleaved caspase 3 (1:1000 dilution; Cell Signaling Technology, Danvers, MA, USA), anti-p65 (1:1000 dilution; Affinity), anti-p-p65 (1:1000 dilution; Affinity), anti-NRF2 (1:1000 dilution; Affinity), anti-HO-1 (1:1000 dilution; Beyotime), and anti-β-actin (1:1000 dilution; Solarbio), were incubated with the membranes at 4 °C overnight. HRP-labeled goat anti-rabbit secondary antibodies (1:5000 dilution; Boster, Wuhan, China) were added at room temperature for 1 h. Finally, protein bands were measured by the enhanced chemiluminescence detection system and evaluated by ImageJ.
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4

Deciphering Immune Signaling Pathways

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The antibodies, reagents and plasmids used in this study were as follows: X-tremeGENE HP DNA transfection reagent (Roche Diagnostics, Grenzach, Germany); anti-CHAC2 (Proteintech, Rosemont, IL, USA); anti-p65 (Affinity Biosciences, Changzhou, China); anti-pp65 (Affinity Biosciences, Changzhou, China); anti-GAPDH (Cell Signaling Technology (CST), Danvers, MA, USA); anti-NOD1 and anti-TLR4 (Affinity Biosciences, Changzhou, China), ML130 inhibitor and TAK-242 (Selleck, Houston, TX, USA), pcDNA3.1 plasmids (Invitrogen, Carlsbad, CA, USA).
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5

Immunofluorescence Analysis of Kidney Tissue

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The kidney tissue sections (5 μm) were deparaffinized, rehydrated, and washed with PBS. Cells were fixed in 4% paraformaldehyde, incubated with 0.1% Triton X-100 (Beyotime), and washed with PBS. Tissue sections and cells were blocked in goat serum for 15 min. For TOLLIP-TLR2 and TOLLIP-TLR4 staining, tissue sections were subjected to incubation with anti-TOLLIP (ABclonal, China) and anti-TLR2 (NOVUS, USA)/anti-TLR4 (Santa Cruz, USA) antibodies (1 : 50 dilution) at 4°C overnight, followed by incubation with FITC-conjugated goat anti-rabbit IgG or Cy3-conjugated goat anti-mouse IgG (Beyotime; 1 : 200 dilution) at room temperature for 90 min. For cleaved caspase-3, NLRP3, and p65 staining, tissue sections or cells were subjected to incubation with anti-cleaved caspase-3 (Affinity, China), anti-NLRP3 (ABclonal), and anti-p65 (Affinity) antibodies (1 : 100 dilution) at 4°C overnight, followed by incubation with Cy3-conjugated goat anti-rabbit IgG (1 : 200 dilution) at room temperature for 60 min. Next, tissue sections or cells were subjected to dihydrochloride (DAPI) (Aladdin) nuclear staining. Images were captured using a fluorescence microscope (OLYMPUS).
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6

Comprehensive Western Blotting Protocol

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Western blotting was performed as described previously [54 (link)]. Briefly, cells and liver tissue samples were collected and lysed in RIPA buffer supplemented with a protease inhibitor cocktail (Solarbio, Beijing, China). Protein concentration was measured using a BCA protein assay kit (LABLEAD, Beijing, China). Proteins were separated by 10% SDS-PAGE gel at 115 V for 1.2 h, then were transferred to a PVDF membrane at 200 mA for 1 h. The membranes were blocked with 5% milk in TBST for 1 h and incubated overnight at 4 °C with primary antibodies. Primary antibodies included anti-Smad4, anti-α-SMA, anti-GAPDH, anti-E-cadherin, anti-ID1, anti-CTGF, anti-p65, anti-p-p65, anti-p38, and anti-p-p38 (Affinity Biosciences, Cincinnati, OH, USA). Followed by HRP-conjugated goat, anti-mouse and goat anti-rabbit IgG (Solarbio, Beijing, China) were used as secondary antibodies. Protein bands were scanned using a Clinx Science Instrument and quantified with Image J software.
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