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14 protocols using tf1 cells

1

Maintenance of TF1 and GM11906 Cells

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TF1 cells (ATCC) were maintained in Roswell Park Memorial Institute Medium (RPMI) 1640, 10% fetal bovine serum (FBS), 2 mM L-Glutamine and 2 ng/ml recombinant human Granulocyte-Macrophage Colony-Stimulating Factor (GM-CSF) (Peprotech) and incubated at 37°C and 5% CO2. GM11906 cells (Corriell) were maintained in Roswell Park Memorial Institute Medium (RPMI) 1640, 15% fetal bovine serum (FBS) and 2 mM L-Glutamine and incubated at 37°C and 5% CO2.
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2

IDH2-mutant Cell Culture Conditions

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TF‐1 cells (CRL‐2003; ATCC) and TF‐1 IDH2 mut cells (CRL‐2003IG; ATCC), in which the homozygous c.419G > A knock‐in mutation encoding the IDH2R140Q protein was induced by CRISPR/Cas9 technology, were purchased from the ATCC. These cells and THP‐1 cells were maintained in RPMI‐1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin. The following reagents were added to the culture: 2 ng/mL human GM‐CSF (PeproTech), 1 μM AG‐221 (enasidenib; Selleck Chemicals), 10 μM m‐3M3FBS (Merck), 100 nM U‐73122 (Selleck Chemicals), 2 IU/mL erythropoietin (Kissei Pharmaceutical), 20 μM celecoxib (Selleck Chemicals), and 50 μM zileuton (Selleck Chemicals). The same concentration of DMSO was added as a vehicle control. Regarding live cell counting, dead cells were excluded by Trypan blue dye staining.
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3

Cell Culture Conditions for TF1 and 293T Cells

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TF1 cells (ATCC) were maintained in Roswell Park Memorial Institute Medium (RPMI) 1640, 10% fetal bovine serum (FBS), 2mM L-Glutamine and 2ng/ml recombinant human Granulocyte-Macrophage Colony-Stimulating Factor (GM-CSF) (Peprotech) and incubated at 37°C and 5% CO2. 293T cells (ATCC) were maintained in Dulbecco’s Modified Eagle Medium-High Glucose (DMEM), 10% fetal bovine serum (FBS), and 2mM L-Glutamine and incubated at 37°C and 5% CO2.
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4

Cell Culture and EV Isolation Protocol

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The human mast cell line, HMC1 cells and erythroleukemic cell line, TF1 cells (ATCC, Manassas, VA) were cultured in IMDM (HyClone, Logan, UT). Human embryonic kidney HEK293T (ATCC, Manassas, VA) and human melanoma cell, MML1 cells were cultured in RPMI1640 (Sigma Aldrich, St Louis, MO) media. Media was supplemented with 10% EV-depleted FBS (Sigma Aldrich), 2 mM L-glutamine (HyClone), and 1.2 U/ml 1-thioglycerol (Sigma Aldrich). The human MSCs from bone marrow were obtained as passage 1 from the MSC distribution of the Institute of Regenerative Medicine at Scott and White, USA, and cultured in alpha minimum essential medium (GIBCO® GlutaMAX™, Invitrogen, Carlsbad, CA) supplemented with 15% EV-depleted FBS (Sigma Aldrich). Three to four passages of MSCs were used for EV isolation. All media contained 100 U/ml penicillin and 100 µg/ml streptomycin (HyClone). For the EV depletion, FBS was ultracentrifuged at 118,000 × gavg (Type 45 Ti rotor, Beckman Coulter, Miami, FL) for 18 h and filtered through a 0.22 µm filter as previously described [16].
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5

Maintenance of TF1 and GM11906 Cells

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TF1 cells (ATCC) were maintained in Roswell Park Memorial Institute Medium (RPMI) 1640, 10% fetal bovine serum (FBS), 2 mM L-Glutamine and 2 ng/ml recombinant human Granulocyte-Macrophage Colony-Stimulating Factor (GM-CSF) (Peprotech) and incubated at 37°C and 5% CO2. GM11906 cells (Corriell) were maintained in Roswell Park Memorial Institute Medium (RPMI) 1640, 15% fetal bovine serum (FBS) and 2 mM L-Glutamine and incubated at 37°C and 5% CO2.
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6

Cell Culture Conditions for Various Cell Lines

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TF-1 cells (#CRL-2003, ATCC; purchased 2018; not authenticated) were cultured in RPMI 1640 medium with 10% FBS and 2 ng/ml recombinant human GM-CSF (R&D Systems). K-562 (#CCL-243, ATCC; purchased 2015; not authenticated; Mycoplasma tested in Nov. 2018), H1299 (#CRL-5803, ATCC; purchased 2015; not authenticated; Mycoplasma tested in Nov. 2018), MOLM-14, MV-4–11 and HEL cells were cultured in RPMI 1640 medium with 10% FBS. HEK293T was cultured in Dulbecco Modified Eagle Medium (DMEM) with 10% FBS. Cells were cultured at 37°C with of 5% CO2. MOLM-14, MV-4–11, HEL and HEK293T cells were obtained from Dr. Gary Gilliland’s laboratory at Brigham and Women’s Hospital in 2004; not authenticated.
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7

IDH1 Mutant Cell Line Generation

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HEK-293T cells (ATCC) were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM), containing 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin. TF-1 cells (ATCC) were maintained in RPMI containing 10% FBS, 1% penicillin/streptomycin, and 2 ng/mL recombinant human GM-CSF (R&D Systems). Lentiviral particles were generated by Lipofectamine 2000 (Invitrogen) co-transfection of HEK-293T cells with control or IDH1 expression vectors and the lentiviral packaging constructs psPAX2 (GAG-Pol) and pMD2.G (VSV-G) in a 2:2:1 ratio. Lentiviral infections were performed as previously described in ref. 21 (link), and the infected cells were selected with 1 μg/mL puromycin starting 24 h after infection. TF-1 cells were treated with ivosidenib (Selleck Chemicals, LLC) or LY3410738 (Eli Lilly) prior to immunoblot analysis, 2HG measurement, and growth factor deprivation. Cell lines were authenticated by Short Tandem Repeat (STR) profiling. Cell lines repeatedly tested negative for mycoplasma throughout the experimental period.
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8

Differentiation and Culture of Monocyte-Derived Macrophages

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Monocyte suspension cells (THP-1, Public Health England Culture Collection) were cultured undifferentiated in RPMI-1640 (A10491, Gibco) supplemented with 10% BCS (30-2030, ATCC) (complete medium). For M0 differentiation, THP-1 cells were centrifuged and the conditioned media were replaced with fresh complete medium supplemented with 100 ng/ml phorbol 12-myristate-13-acetate (PMA, Sigma P8139). After 48 h, M0 macrophages were further differentiated into M1 or M2 macrophages as described [17 (link), 25 ]. Briefly, M0 differentiation medium was removed and adherent M0 cells were washed twice with serum-free medium. For further differentiation, complete medium supplemented with either 100 ng/ml LPS and 20 ng/ml IFN-γ (M1) or 20 ng/ml IL-4 and 20 ng/ml IL-13 (M2) was added to adherent M0 cells and then incubated for up to a further 48 h. A375 cells (ATCC) were cultured in DMEM (41966, Gibco) supplemented with 10% FBS (F7524, SIGMA). Cells were seeded at a density of 2 e 4 cell/cm2 and passaged every 3 days. TF-1 cells (ATCC) were cultured in RPMI-1640 supplemented with 2 ng/ml GM-CSF and 10% FBS. Cells were seeded at a density of 2 e 5 cells/ml and passaged twice a week.
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9

Macrophage Differentiation and Cancer Cell Culture

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Monocyte suspension cells (THP-1, Public Health England Culture Collection) were cultured undifferentiated in RPMI-1640 (A10491, Gibco) supplemented with 10% BCS (30-2030, ATCC) (complete medium). For M0 differentiation, THP-1 cells were centrifuged and the conditioned media replaced with fresh complete medium supplemented with 100 ng/ml phorbol 12-myristate-13-acetate (PMA, Sigma P8139). After 48 h, M0 macrophages were further differentiated into M1 or M2 macrophages as described (17, (link)25) (link). Briefly, M0 differentiation medium was removed and adherent M0 cells were washed twice with serumfree medium. For further differentiation, complete medium supplemented with either 100 ng/ml LPS and 20 ng/ml IFN-γ (M1) or 20 ng/ml IL-4 and 20 ng/ml IL-13 (M2) was added to adherent M0 cells and then incubated for up to a further 48h. A375 cells (ATCC) were cultured in DMEM (41966, Gibco) supplemented with 10% FBS (F7524, SIGMA). Cells were seeded at a density of 2e4 cell/cm 2 and passaged every 3 days. TF-1 cells (ATCC) were cultured in RPMI-1640 supplemented with 2 ng/ml GM-CSF and 10% FBS. Cells were seeded at a density of 2e5 cells/ml and passaged twice a week.
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10

Mouse Models for Hematopoietic Research

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C57BL6/J mice were purchased from Jackson Laboratories (Bar Harbor, ME)
and treated with Diprotin A (Peptides International; Louisville, KY) or PBS
control as reported.3 dpp4−/−18 (link), FLT3-ITD19 (link), and
PtpnE76K/+LysM-Cre+ (Ptpn11E76K)20 (link) mice are all on a C57BL6/J
mouse strain background, and have been previously described. Mouse bone marrow
(mBM) and human cord blood [(CB) from the Eskenazi (formerly Wishard)
Hospital, Indiana University School of Medicine, Indianapolis, Indiana, USA, and
from Cord:Use Cord Blood Bank, Orlando, Florida, USA] were used as
described.21 (link) AML
patient samples were obtained from peripheral blood samples of patients under an
approved IRB (9402–10 & 9812–11).
The Indiana University Committee on Use and Care of Animals, and the
Indiana University Institutional Review Board, respectively, approved mBM, human
CB, and AML studies. CB received was from to be discarded material. TF-1 cells,
originally obtained from T. Kitamura, Japan, are available from American Type
Culture Collection (CRL-2003) and were used as described.3 , 22 (link),
23 (link)
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