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9 protocols using anti hemagglutinin ha

1

Immunoblot Analysis of Protein Targets

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Immunoblot analysis was performed as previously described (44 (link)). Antibodies were used as follows: anti-USP25 (Abcam, Cambridge, MA, USA; ab187156, 1:1000), anti-APP (Millipore, Billerica, MA, USA; MAB348, 1:1000), anti-Iba1 (Wako Pure Chemical, Osaka, Japan; 016-20001, 1:500), anti-GFAP (glial fibrillary acidic protein) (Cell Signaling Technology, Danvers, MA, USA; 3670, 1:1000), anti–β-III-tubulin (Abcam, ab18207, 1:1000), anti-HA (hemagglutinin) (Sigma-Aldrich, St. Louis, MO, USA; H6908, 1:1000), anti-ubiquitin (Santa Cruz Biotechnology, Santa Cruz, CA, USA; sc-8017, 1:500), anti–β-actin (Xmbcss, Xiamen, China; bc001, 1:2000), and horseradish peroxidase (HRP)–conjugated secondary antibodies (Thermo Fisher Scientific, 31430 or 31460; 1:3000).
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2

Lipid Metabolism Regulation Pathway

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Tissue culture medium was from Gibco. [γ-32P]ATP was purchased from PerkinElmer. Palmitate, fatty-acid-free BSA, MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide], ethylene-diamine-tetra-acetic acid (EDTA), disodium salt, perchloric acid, hydrogen chloride, Anti-HA (hemagglutinin), SPT2 antibodies, and insulin human solution were from Sigma–Aldrich. Myriocin, l-cycloserine, D609, C2-ceramide, C2-dihydroceramides, and N-butyldeoxynojirimycin were from Enzo Life Sciences. Ro31-8220 and DAG kinase were from Calbiochem. All solvents were from Merck Eurolab or Fisher Scientific. phospho-Akt (Thr 308), phospho-Akt (Ser 473), Akt, p-PKCζ (Thr 410-403), PKCζ, and β-actin antibodies were from Cell Signaling. Ultrapure water was obtained with a Milli-Q system (Millipore, Bedford, MA, USA). Adenoviruses containing the cDNA of GFP, wild-type PKCζ (WT- PKC), constitutive active PKCζ (CA-PKCζ), or kinase-dead PKCζ (KD-PKCζ) were prepared as previously described [14] (link). All PKCζ constructs contained an HA tag for monitoring their expression.
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3

Western Blot Protein Analysis

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Protein extracts were prepared using a NaOH cell lysis method (Dilova et al., 2002 (link)), loaded onto SDS–PAGE gels, and transferred to nitrocellulose membrane. Membranes were probed with anti-hemagglutinin (HA; 1:5000; Sigma-Aldrich, St. Louis, MO), anti–glucose-6-phosphate dehydrogenase (G6PDH; Zwf1; 1:100,000; Sigma-Aldrich), or anti-GFP (1 μg/ml; N86/8; Neuromab, Davis, CA) primary antibodies and visualized using the appropriate secondary antibodies conjugated to IR Dye (1:5000; Li-COR Biosciences, Lincoln, NE). Quantifications were performed using ImageQuant software (GE Healthcare, Little Chalfont, UK). The relative distribution of the signal in each lane was figured by measuring the level of signal in three distinct portions of each lane—upper (hyperphosphorylated), center (phosphorylated), and lower (dephosphorylated)—and then dividing each portion by the total amount of signal within each lane.
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4

Western Blot Protein Detection

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Proteins were detected by western blot using anti-p24 (1:1,000 dilution, #3637, NIH), anti-Nopp 140 (1:5,000 dilution, a generous gift from U. Thomas Meier, Albert Einstein College of Medicine), anti-α-tubulin (1:8,000 dilution, #PA5–29444, Invitrogen), anti-FLAG (1:1,000 dilution, Sigma), anti-hemagglutinin (HA) (1:1,000 dilution, Sigma), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5,000 dilution, Invitrogen). Secondary antibodies against rabbit and mouse IgG conjugated to IRDye 680LT or IRDye 800CW were obtained from Li-Cor (1:10,000 dilution). Bands were detected by scanning blots using the Li-Cor Odyssey imaging system in the 700 nm or 800 nm channels.
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5

Visualizing Ustilago maydis Protein Secretion

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Ustilago maydis strain AB33Potefjsi1‐3xHA was generated through insertion of plasmid pUG‐PotefJsi1‐3xHA into the ip locus of AB33 according to Aichinger et al. (2003). We performed the secretion assay according to Brachmann et al. (2001). Mouse monoclonal anti‐hemagglutinin (HA; Sigma Aldrich) and anti‐actin (Invitrogen) antibodies were used for Western blot. The experiment was repeated with three independent transformant strains with similar results.
To visualize protein secretion in planta, we generated the SG200Δjsi1Pcmu1Jsi1mCherry strain by integrating Jsi1‐mCherry under control of the cmu1 promoter in the ip locus. In addition, we built a nonsecreted version of the Jsi1‐mCherry strain (SG200Pcmu1Jsi127641mCherry). We independently infected both strains in 7‐d‐old maize seedlings. mCherry fluorescence signal was detected using confocal microscopy at 3 d postinfection (dpi).
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6

Immunoprecipitation and Western Blot Analysis

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NIH3T3 cells were transfected using Lipofectamine 2000 (Invitrogen, ThermoFisher). At 48 hr post-transfection cells were harvested in EBC buffer (50mM Tris-Cl pH 8.0, 150mM NaCl, 0.5% NP-40 and 0.5mM EDTA) supplemented with protease inhibitors (Pierce). Anti-Hemagglutinin (HA; Sigma) antibodies coupled to agarose beads were used for immunoprecipitations followed by SDS-PAGE and western blot analysis on PVDF membranes. After incubation with appropriate primary and secondary antibodies, blots were visualized by enhanced chemiluminescence, and images captured using a Syngene ChemiXX6 imager with Genesys software version 1.5.5.0. Signals were quantified with Genetools software version 4.03.05.0. Antibodies included PTPN14 (CST #13808), HA (Abcam ab9110), Actin (Millipore MAB1501), pRB (Santa Cruz SC74570), Flag (Sigma F3165), and GFP (Santa Cruz SC-9996). Secondary anti-mouse and anti-rabbit HRP antibodies were from GE Healthcare.
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7

Western Blot Protein Detection

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Proteins were detected by western blot using anti-p24 (1:1,000 dilution, #3637, NIH), anti-Nopp 140 (1:5,000 dilution, a generous gift from U. Thomas Meier, Albert Einstein College of Medicine), anti-α-tubulin (1:8,000 dilution, #PA5–29444, Invitrogen), anti-FLAG (1:1,000 dilution, Sigma), anti-hemagglutinin (HA) (1:1,000 dilution, Sigma), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5,000 dilution, Invitrogen). Secondary antibodies against rabbit and mouse IgG conjugated to IRDye 680LT or IRDye 800CW were obtained from Li-Cor (1:10,000 dilution). Bands were detected by scanning blots using the Li-Cor Odyssey imaging system in the 700 nm or 800 nm channels.
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8

Protein Detection by Western Blot

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Cells were lysed in lysis buffer (50 mM Tris [pH 8.0], 280 mM NaCl, 0.5% IGEPAL 40, 10% glycerol, 5 mM MgCl2). Proteins were detected by western blot using anti-FLAG (1:1,000 dilution; Sigma), anti-hemagglutinin (HA) (1:1,000 dilution; Sigma), anti-CypA (1:5,000 dilution; catalog number ab58144; Abcam), anti-TRIM5αhu (1:1,000 dilution; catalog number 14326S; Cell Signaling Technology), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5,000 dilution; Invitrogen), or anti-p24 (1:1,000 dilution, catalog number 3637; NIH) antibodies. Secondary antibodies against rabbit and mouse IgG conjugated to IRDye 680LT or IRDye 800CW were obtained from Li-Cor (1:10,000 dilution). Bands were detected by scanning blots using the Li-Cor Odyssey imaging system in the 700-nm or 800-nm channels.
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9

Quantitative Western Blot Analysis

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Proteins were detected by western blot using anti-p24 (1:1,000 dilution, #3637, NIH), anti-Nopp 140 (1:5,000 dilution, a generous gift from U. Thomas Meier, Albert Einstein College of Medicine), anti-tubulin (1:8,000 dilution, #PA5-29444, Invitrogen), anti-FLAG (1:1,000 dilution, Sigma), anti-hemagglutinin (HA) (1:1,000 dilution, Sigma), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5,000 dilution, Invitrogen). Secondary antibodies against rabbit and mouse IgG conjugated to IRDye 680LT or IRDye 800CW were obtained from Li-Cor (1:10,000 dilution). Bands were detected by scanning blots using the Li-Cor Odyssey imaging system in the 700 nm or 800 nm channels.
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