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5 protocols using p5747

1

Isolation and Immunoblotting of Plasma Membrane Proteins

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The indicated plant tissues were harvested, weighed, and ground in liquid nitrogen. Total proteins were extracted in protein extraction buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 10% Glycerol, 5.0 mM DTT, 2.0 mM Na2MoO4, 2.5 mM NaF, 1.5 mM Na3VO4, 0.5% [v/v] IGEPAL CA-630 [Sigma-Aldrich], 1.0 mM PMSF, 1% [v/v] protease inhibitor cocktail and 1× PhosSTOP phosphatase inhibitor cocktail [Roche]). Plasma membrane proteins were isolated using a Plasma Membrane Protein Isolation Kit (Invent, SM-005-P) according to the manufacturer’s protocol. Protein samples were separated on 4–12% precast SurePAGE gels (GenScript) at 120 V for 1.5 h and transferred onto activated PVDF membranes at 200 mA for 2 h. Immunoblotting was performed using the following antibodies: anti-BZR1 (Youke Biotechnology, Shanghai, China, YKRP082), 1:1000; anti-BRI1 (Agrisera, AS12 1859), 1:5000; anti-SERK3/BAK1 (Agrisera, AS12 1858), 1:5000; anti-FLAG (Sigma, F1804), 1:2500; anti-phosphoserine (Sigma, P5747), 1:500; anti-phosphothreonine (Cell signaling, 9381), 1:500; anti-HA (Covance, MMS-101R), 1:2500; anti-rabbit (MBL, 458), 1:10,000; and anti-mouse (Solarbio, SE131), 1:10,000.
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2

Western Blot Analysis of Regulatory Proteins

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Western blot analysis was performed according to standard procedures using the following antibodies: Fra-2 (1:100; CNIO Monoclonal Antibody Unit), Ezh2 (1:1000; no. AC22 Cell Signaling), p-Fra-1 (Ser265) (1:1000; no. 3880, Cell Signaling), pan-methyl lysine (1:200; ab174719, Abcam), p-Ser (1:500; P5747, Sigma), p-ERK1/2 (Thr202/Tyr204) (1:1000; no. 4370), ERK1/2 (1:1000; no. 4695, Cell Signaling), ΔNp63 (1:500; sc-8609, Santa Cruz Biotechnology), Suz12 (1:1000; ab12073, Abcam), Flg (1:1000; Covance), Lor (1:1000; Covance), and vinculin (1:1000; V9131, Sigma).
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3

Colonic Tissue Protein Extraction

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Colonic specimens were dissected to separate the mucosal/submucosal layer from underlying neuromuscular tissues. Samples of colonic muscular tissue or ICSMCs were homogenized in RIPA lysis buffer (Cole Parmer homogenizer, Generalcontrol SpA, Milano, Italy). Homogenates were spun by centrifugation at 20,000 × g for 15 min. at 4°C. Supernatants were then separated from pellets and stored at −80°C. Protein concentration was determined by the Bradford method (Protein Assay Kit; Bio-Rad, Hercules, CA, USA). Equivalent amounts of protein lysates (50 μg for tissues and 10 μg for ICSMCs) were separated by 8% SDS-PAGE for immunoblotting. After transfer onto a PVDF membrane, the blots were blocked and incubated overnight with a rabbit anti-collagen I antibody (Ab34710; Abcam, Cambridge, UK) or a goat anti-transmembrane 16A/Anoctamin1 (TMEM16A/ANO1) antibody (Table1). After repeated washings with TBS-T, appropriate secondary peroxidase-conjugated antibodies (Santa Cruz Biotech, Santa Cruz, CA, USA) were added for 1 hr at room temperature. Immunoreactive bands were then visualized by incubation with chemiluminescent reagents (Immobilon reagent; Millipore, Billerica, MA, USA), and examined by Kodak Image Station 440 for signal detection. To ensure equal sample loading, blots were stripped and reprobed for determination of β-actin by a specific antibody (P5747; Sigma-Aldrich, Milan, Italy).
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4

Western Blotting Protocol for Key Proteins

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Western blotting was performed as described [34 (link)]. Primary antibodies were rabbit anti-Drosha mAb (ab183732, Abcam, Cambridge, UK), mouse anti-PLK1 mAb (#4513, Cell Signalling, Danvers, MA, USA), mouse anti-Flag epitope tag M2 mAb (F1804, Sigma-Aldrich, St. Louis, MO, USA), rabbit anti-DGCR8 mAb (ab191875, Abcam), rabbit anti-GAPDH mAb (#2118, Cell Signalling), rabbit anti-Lamin B1 mAb (ab229025, Abcam), mouse anti-phospho-serine (P5747, Sigma-Aldrich) or mouse anti-β-actin mAb (ab6276, Abcam). Secondary antibodies were goat anti-mouse- or goat anti-rabbit-HRP as appropriate (12-349 and 12-348, respectively, Sigma-Aldrich). Detection was performed using Luminata Forte HRP substrate (Millipore, Burlington, MA, USA).
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5

Comprehensive Protein Analysis of Sample

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Protein content (N x 6.25) was determined by Dumas combustion, Method 46-30 (AACC International, 2000) .
In vitro pepsin protein digestibility was determined using the procedure of Hamaker, Kirleis, Mertz, & Axtell (1986) as modified by Taylor & Taylor (2002) and using pepsin ≥250 units/mg solid (P7000) (Sigma-Aldrich, St. Louis, MO).
In vitro multi-enzyme protein digestibility was determined according to Hsu, Vavak, Satterlee, & Miller (1977) . Samples were digested with trypsin, 13,000-20,000 BAEE units/mg protein (T03030, Sigma-Aldrich), bovine Chymotrypsin type II, 60 units/mg protein (C 4129, Sigma-Aldrich) and Protease XIV, 3.5 units/mg solid (P5747, Sigma-Aldrich).
Lysine was determined by the Pico-Tag method after acid hydrolysis of the protein (Bidlingmeyer, Cohen, & Tarvin, 1984) .
Trypsin inhibitor activity was determined according to Method 22-40 (AACC International, 2000) .
Total phenolic content (TPC) was determined by a Folin-Ciocalteu method (Waterman & Mole, 1994) with catechin as standard.
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