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2 protocols using anti ccr6

1

Isolation and Culture of Human Memory T Cells

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Samples were obtained from healthy donors participating in the Benaroya Research Institute Immune Mediated Disease Registry. Informed consent was obtained from all subjects according to IRB approved protocols at Benaroya Research Institute. CD4+CD25 cells were enriched from PBMCs by positive selection with CD4-specific microbeads (Miltenyi Biotec). Memory cell subsets were sorted to over 97% purity as CD4+CD45RA-CD45RO+CD127+CD25− using anti-CD45RA (eBioscience), anti-CD45RO (Biolegend), anti-CD127 (BD Horizon), anti-CD25 (Biolegend) and anti-CD4 (Invitrogen). Antibodies used for sorting of memory cell subsets were: anti-CCR6 (eBioscience); anti-CCR10 (R&D Systems), anti-CCR4 (Biolegend), anti-CXCR3 (BD Pharmingen), anti-IL1R1 (R&D Systems). CD14+ monocytes were isolated from PBMCs by positive selection with CD14-specific microbeads (Miltenyi Biotec). Cells were cultured in RPMI 1640 medium supplemented with 2 mM glutamine, 1% (vol/vol) nonessential amino acids, 1% (vol/vol) sodium pyruvate, penicillin (50 U/ml), streptomycin (50 µg/ml) (all from Invitrogen) and 5% heat-inactivated human serum. In some experiments, recombinant human IL-1β (10 ng/ml; R&D Systems), IL-12 (10 ng/ml; R&D Systems) or IL-23 (25 ng/ml; eBioscience) were added to the culture.
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2

Phenotypic Analysis of Senescent and Exhausted T Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated using coll-paque (GE Healthcare, USA) for cellular phenotypic analysis of senescent and exhausted T cells by ow cytometry. For analysis of surface markers, cells were stained in PBS containing 2% fetal bovine serum (FBS, Thermo sher, USA)
with antibodies as indicated. Then ow cytometric analysis was carried out in BD LSRFortessa X20. The gating strategy to identify T cell subsets was applied as described previously 28 . Brie y, markers related to T cell senescence and exhaustion were also monitored using PD-1 TIM3 CD28 and CD57 antibodies.
Antibodies used in this study were from BD Biosciences and eBioscience, including anti-CD4 (GK1.5, 1:100), anti-CD8 (53-6.7, 1:100), anti-CD25 (PC61, 1:100), anti-CD45RA (HI100, 1:100), anti-CXCR3 (G025H7, 1:100), anti-CCR4 (L291H4, 1:100), anti-CCR6 (G034E3, 1:100), anti-CCR7 (G043H7, 1:100), anti-CD127 (A019D5, 1:100), anti-CXCR5 (RF8B2, 1:100), anti-CD28 (CD28.2, 1:100), anti-CD57 (NK-1, 1:100), anti-KLRG1 (2F1, 1:100), anti-PD-1 (EH12.2H7, 1:100), anti-TIM3 (F38-2E2, 1:100).
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