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3 protocols using fvd efluor450

1

Scn8a Mutant Peritoneal Cell Profiling

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Peritoneal cells from Scn8admu/+ and Scn8a+/+ mice (n = 16 each) were harvested by i.p. injection and recovery of 4 ml PBS, 0.5% bovine serum albumin, 5 mM EDTA. Mouse peritoneal cavity cells (PCC) were counted. Cells were centrifuged at 400 x g for 5 minutes at 4°C and resuspended in a 1/1000 dilution of fixable viability dye (FVD) eFluor 450 (eBiosciences) in PBS for 20 minutes. Then the cells were washed with wash buffer (PBS + 2% FBS + 20 mM NaN3), centrifuged and resuspended in antibody cocktails containing anti-CD19-BV510 (clone 6D5, BioLegend), anti-CD11b-PE-eFL610 (clone M1/70, eBiosciences), CD117 (c‐kit)‐PE (clone 2B8, BioLegend), anti-CD4-APC (clone GK1.5, eBiosciences), anti-FcϵRI-APC eFL780 (clone Mar-1, eBioscience), anti-CD8a-BV650 (clone 53-6.7, BD Biosciences), anti-CD3-BV711 (clone 145-2C11, BD Biosciences), anti-Siglec-F-PE-CF594 (clone E50-2440, BD Bioscience), anti-CD11b-PE (clone M1/70, eBiosciences), anti-F4/80-PE-Cy7 (clone BM8, eBioscience), anti-Ly6C-APC-eF780 (clone HK1.4, eBioscience), or anti-Ly6G-BV605 (clone 1A8, BD Biosciences) for 30 minutes. Stained fixed cells were acquired for analysis using a BD LSRFortessa and results were analyzed using FlowJo (Ashland, OR) software. A visual representation of the gating strategy used to identify the cell populations in the mouse peritoneum is provided (Supplementary Figure 2).
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2

Multiparametric Immune Profiling by Flow Cytometry

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The following antibodies were used for flow cytometry: FITC anti–T-bet (clone 4B10), Pacific Blue anti-CD45RA (HI100), APC-H7 anti–interferon-γ (4S.B3), and Pacific Blue anti-CD57 (HCD57; BioLegend); APC anti-Eomes(WD1928) and eFluor780 anti-CD127 (eBioRDR5; eBioscience); APC-H7 anti-CD27 (M-T271), APC anti–PD-1 (MIH4), Alexa Fluor 647 anti-STAT4 (pY693; 38/pStat4), PerCP anti-CD3 (SK7), V500 anti-CD8 (SK1), V450 anti-CD8 (RPA-T8), PerCP anti-CD14 (MϕP9), and PerCP anti-CD19 (SJ25C1; BD). 7-AAD (BD) was used as viability dye in ex vivo stainings, whereas FVD eFluor450 (eBioscience) was used for fixed cells.
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3

Isolation and Characterization of PBMCs

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At 72 hours after GMH, under deep isoflurane anesthesia, blood samples were collected via cardiac puncture and mixed with citrate-phosphate dextrose anticoagulant solution (Sigma-Aldrich) in a 1:5 ratio. Peripheral blood mononuclear cells (PBMCs) were then isolated by ammonium chloride lysis of red blood cells. PBMCs were then washed and pelleted by centrifugation (1500 rpm for 5 minutes at 4 °C). The resulting cell suspensions were counted and diluted to approximately 1×106 cells/ml. For multi-color flow cytometry staining, cells were incubated with monoclonal antibodies in PBS for 30 minutes in the dark at 4 °C. Cells were subsequently washed and fixed with 1% paraformaldehyde/PBS before analysis on a MACSQuant Analyzer (Miltenyi Biotec). The anti-rat antibodies used were CD45-APC-eFluor780, CD3-APC (clones: Ox1 and eBioG4.18 respectively, eBioscience, San Diego, CA) and CD11b-PE (clone: Ox42, Biolegend, San Diego, CA). Isotype controls consisted of mouse IgG1κ-APC-eFluor780, IgG1κ-APC and IgG2a,κ-PE. Living cells were identified by forward scatter and side scatter gating along with exclusion of the fixable viability dye FVD eFluor450 (eBioscience), added immediately prior to fixation. Flow cytometry data analysis was conducted using Flowjo data analysis software (Tree Star, Ashland, OR).
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