Tris(3-hydroxypropyltriazolylmethyl)amine (THPTA) and CuSO
4.5H
2O were bought from Sigma-Aldrich. Stock solutions of PDC-click precursors (PDC-4,2-Alk, PDC-4,3-Alk, PDC-4,0-N3 and PDC-4,PEG-N3) and 5-BrdU-click partners (5-BrdU-Alk and 5-BrdU-N3) were prepared in DMSO at 1 mM concentration, and stored in the dark at −20°C. For all the following experiments, copper-catalyst (CuSO
4.5H
2O), THPTA and sodium ascorbate solutions were freshly prepared in ultrapure H
2O at respectively 10 mM for the CuSO
4.5H
2O solution, 50 mM for the THPTA solution and 40 mM for the sodium ascorbate solution.
Oligonucleotide sequences were purchased from Eurogentec as dried samples purified by HPLC-RP. Oligonucleotides were dissolved in MilliQ water at 200 μM concentration and stored at −20°C.
Oligonucleotide sequences used for click reaction
in situ are the following: c-Myc22 (G14T-G23T): TGAGGGTGGGTAGGGTGGGTAA, 22AG: AGGGTTAGGGTTAGGGTTAGGG and TERRA: AGGGUUAGGGUUAGGGUUAGGG.
Oligonucleotides were folded and CuAAC reactions were carried out in K10 buffer (10 mM Li.Caco pH 7.2, 10 mM KCl, 90 mM LiCl).
Solid-phase extraction (SPE) was performed with Clarity® OTX (Phenomenex) columns. To facilitate elution of the fractions, a manifold device as vacuum source was employed (
P = 0.4 Bar).
Masson T., Landras Guetta C., Laigre E., Cucchiarini A., Duchambon P., Teulade-Fichou M.P, & Verga D. (2021). BrdU immuno-tagged G-quadruplex ligands: a new ligand-guided immunofluorescence approach for tracking G-quadruplexes in cells. Nucleic Acids Research, 49(22), 12644-12660.