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20 protocols using viability cytotoxicity kit

1

Dual-Fluorescence Viability Assay

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A viability/cytotoxicity kit (Invitrogen) was used for imaging the live and dead cells. The red fluorescent ethidium homodimer-1 (EthD-1) only permeated through and stained the dead cells, while living cells allow the penetration of non-fluorescent acetomethoxy derivative of calcein (calcein AM) and degrade it into the green fluorescent calcein. The samples were visualised using a multi-photon microscope (MPM) (Zeiss, Germany). All serial optical sections from individual datasets were loaded into Imaris 7.6.1 (Bitplane Ag, Switzerland) software for processing and analysis.
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2

Cell Proliferation and Viability Assays

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SK-HEP1 and HCC-LM3 cells were digested and counted, seeded in 96-well plates (3,000 cells/plate in 200 µl DMEM), and cultured in a 37°C, 5% CO2 incubator. After 0, 24, 48, and 72 h, we washed the culture medium off the cells to be tested, added CCK8 solution according to the instructions, and continued to culture the cells for 2 h. The absorbance value (OD) of each group was measured at 450 nm on a microplate reader and recorded for statistical analysis. We also used the 5-ethynyl-2′-deoxyuridine (EdU) reagent (Ruibo, Guangzhou, China) and a viability/cytotoxicity kit (Invitrogen, Carlsbad, United States) according to the manufacturer’s protocol.
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3

Visualizing BMSC Growth on Hydrogels

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To visualize cell growth and distribution on hydrogel scaffolds, a Live/Dead staining assay was performed by the Viability/Cytotoxicity Kit (Invitrogen, Carlsbad, CA, USA). After incubation for 3 days, the cell-hydrogel scaffold composites were washed and immersed in 2 mM of calcein-AM and 4 mM ethidium homodimer-1 for 2 h at 37 °C. The fluorescence was observed by using Leica TCS-SP8 confocal laser microscopy (CFLM; Leica, Nussloch, Germany) at an excitation wavelength of 568 or 488 nm. Imaris software 7.4.2 (Bitplane, Oxford, UK) was applied to observe the distribution of BMSCs on the hydrogel scaffolds.
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4

Viability Assay for Transfected Neurons

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Single-cell survival assays were performed using a Viability/Cytotoxicity Kit (Invitrogen) according to the manufacturer’s instructions. Briefly, primary-cultured cortical neurons were transfected with GFP-tagged vehicle or LRRK2 plasmids for 48 h. For experiments with MPP+ treatment, the neurons were exposed to MPP+ (30 μM) for another 24 h after 24 h of transfection. Neurons were stained with ethidium homodimer‑1 (EthD‑1) without permeabilization. GFP-positive cells with or without EthD‑1 staining were counted using an Olympus IX51 fluorescence microscope in a blinded manner. Two hundred or more transfected cells were counted for each treatment. Numbers of dead CGNs were calculated as a percentage of cells with colocalization of EthD-1 and GFP in the total number of GFP-positive cells counted.
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5

Cell Tracking and Viability Assays

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For the cell tracker experiments, astrocytes and LUHMES cells were incubated, respectively, with green cell tracker CMFDA (10 ​μM, product number C7025, Invitrogen) and red cell tracker CMTPX (10 ​μM, product number C34552, Invitrogen) for 30 ​min in PBS at 37 ​°C with 5% CO2 and then washed three times with cell culture media. For the image series in Fig. 4, the astrocytes were re-stained just before seeding LUHMES cells to obtain a stronger fluorescent signal to counter the dilution of the fluorophore due to the proliferation of the astrocytes. The green and red colors of the dyes were replaced in Fig. 4 with a blue/red colorblindness-friendly palette. For the calcium imaging, cells were incubated in 0.75 ​μM Calbryte™ 520 AM (AAT Bioquest, product number 2065) for 45 ​min at 37 ​°C and washed three times with respective cell media before the experiment. For the live/DEAD assay, we used a Viability/Cytotoxicity Kit (product number L23224, Invitrogen). Samples were incubated in a final concentration of 2 ​μM calcein AM and 4 ​μM Ethidium homodimer-1 in PBS for 30 ​min at RT. All live imaging was performed with a Zeiss Cell Observer microscope equipped with an incubator chamber, heating, CO2 control, and a Zeiss AxioCam MRm camera.
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6

Cytotoxicity Evaluation of Felodipine

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For determine the cytotoxicity of felodipine at its MIC level, the viability of HepG2 (ATCC HB-8065), human keratinocytes (HaCaT) and rat bone marrow mesenchymal stem cells (rBMSC) were examined as previously described [[32] (link), [33] , [34] (link)]. Briefly, 100 μL of HepG2, HaCaT and rBMSC cells were inoculated into a 96-well plate at a density of 1.0 × 104/well and incubated at 37 °C 5% CO2 for 24 h to allow cells to adhere to the plate. Next, a 2-fold serial dilution of felodipine (ranging from 64 μg/ml to 0 μg/ml) were added to the 96-well plates and incubated for another 24 h. Then, the viability of mammalian cells was examined using Cell Counting Kit-8 (Dojindo, Kumamoto, Japan) and the Viability/Cytotoxicity Kit (Invitrogen, CA, USA) following the manufacturer's instructions. Fluorescence microscopy (Nikon, Japan) was used to visualize the labeled cells. Live cells were stained with Calcein-AM (green), while dead cells were stained with Ethidium homodimer-1 (EthD-1; red).
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7

Live-Dead Cell Visualization Protocol

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Viability/Cytotoxicity Kit (Invitrogen, USA) was applied according to the manufacturer's instruction. The working concentrations of calcein-AM and ethidium homodimer-1 were 2 μM and 0.5 μM, respectively. Images were acquired using a fluorescence microscope (Olympus, Japan).
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8

3D Spheroid Live/Dead Imaging

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A viability/cytotoxicity kit (Invitrogen, UK) was used for imaging the live and dead cells. The red fluorescent ethidium homodimer-1 (EthD-1) only permeated through the cell membrane of the dead cells and stained their nuclei, while living cells allowed the penetration of non-fluorescent acetomethoxy derivative of calcein (calcein AM) and degraded it into the green fluorescent calcein. The spheroid in each well of the 96-well plates was visualised and processed using a high-throughput imaging system, the In Cell Analyser (GE, UK). To process the 3D images, In Cell Investigator software (GE, UK) was used. Briefly, a background threshold was set for all the fluorescent images. The segmentation was selected using an iterative process of erosions and dilations. This allowed us to calculate a cell death percentage for the whole spheroid, indicated by the segmented red fluorescent areas.
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9

Determining Cell Viability via Fluorescent Assay

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Cell viability was determined in the presence of NTsiRNA or siERdj4 using viability/cytotoxicity kit from Invitrogen following the manufacturer's protocol. Briefly, AAT KO Huh7.5 cells transfected with NTsiRNA or siERdj4 were cultured on 96 well assay plate for 1 day. Twenty‐four hour post silencing they transfected with ZAAT plasmid and grown until acceptable cell density. Cells with no treatment considered as live control and 0.1% saponin was added to the cells for 10 min for dead cells control. Four micrometer of Ethidium homodimer‐1 (EthD‐1) and 2 µM of Calcein AM were added to each well. The plate was then incubated at room temperature for 45 min. Absorbance at 530 and 645 nm was measured and recorder using ELISA microplate reader.
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10

Evaluating Cell Viability in Microtissues

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Cell viability was assessed using live/dead Viability/Cytotoxicity Kit (L3224, Invitrogen Carlsbad, CA, USA) and 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium) (MTS) assay. For the live/dead assay, on the target time point, the microtissues were washed by PBS and stained using 2 µM calcein-AM and 4 µM ethidium homodimer at room temperature for 30 min. Next, the micrographs were obtained using an inverted fluorescence microscope (IX71, Olympus, Tokyo, Japan). To prepare the MTS assay, on the appropriate time point, 100 LMTs or NMTs were incubated in one well of 96-well containing a final volume of 100 µl co-culture media. Then, 20 µl of the MTS solution was added to each well and incubated at 37 °C for 3 hours. Finally, the absorbance was recorded at 490 nm using a microplate reader (51118650, Thermo Scientific, Multiskan Spectrum).
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