The largest database of trusted experimental protocols

11 protocols using rab27a

1

Western Blot Analysis of Exosome and Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
To measure exosome proteins, total proteins extracted from cell lysates and secreted extracellular vesicles were separated by SDS-PAGE, transferred to a nitrocellulose membrane (Millipore), and blotted with anti-CD63 antibodies (1:500, Santa Cruz Biotechnology) and GM130 (1:250, BD Bioscience, San Jose, CA, USA).
To measure endogenous proteins, cell lysate proteins (10 μg) were separated by a 4–12% SDS polyacrylamide gel. The proteins were extracted by RIPA buffer (Thermo Scientific, Rockford, IL, USA), transferred to a nitrocellulose or PVDF membrane (Invitrogen), and immunoblotted using primary antibodies against ameloblastin (1:200, Santa Cruz Biotechnology), amelogenin (1:200, Santa Cruz Biotechnology), Col IV (1:400, Abcam, Cambridge, MA, USA), laminin (1:400, abcam), DSP (1:200, Santa Cruz), Bglap (1:400, Millipore), RunX2 (1:500, abcam), Rab27A (1:200, abcam), Rab27B (1:400, abcam), β-catenin (1:500, abcam), lamin B (1:500, Santa Cruz), and Gapdh (1:500, Santa Cruz).
IRDye 800CW secondary antibodies (1:10 000, LI-COR, Lincoln, NE, USA) were applied for 60 min. The signals were detected by an Odyssey Imaging System (LI-COR).
+ Open protocol
+ Expand
2

Protein and Histone Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were collected, and the total protein and core histones from whole-cell lysates were extracted. About 30 μg of proteins was electrophoresed by SDS-PAGE and then transferred to nitrocellulose membranes. The proteins were probed first with primary antibodies against BATF (CST, Massachusetts, USA), IRF4 (CST), RelB (CST), RAB27A (Abcam, Cambridge, UK), H2BK12ac (PTM, Hangzhou, China), H2BK15ac (PTM), H3K9ac (PTM), H3K79ac (Active motif, Carlsbad, CA, USA), H4K77ac (PTM), and GAPDH (PTM) and then with horseradish peroxidase-coupled secondary antibodies at 1:5,000 dilution (PTM). Proteins were visualized with the antibodies using an enhanced chemiluminescence kit (GE Healthcare, Boston, MA, USA).
+ Open protocol
+ Expand
3

Multiplex Imaging of Cytotoxic Granule Components

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following Abs were used against perforin (dG9), LAMP1-AlexaFluor 488 (H4A3), CD3 (UCHT1), CD56 (HCD56), NKG2D (1D11) (BioLegend); CI-MPR (2G11), dynein heavy chain, Rab27a (Abcam); EEA-1 (14/EEA1; BD Biosciences); cathepsin D, Rab7, Rab9 (Cell Signaling); LAMP1 (H4A3), LAMP2 (H4B4), granzyme B (GB7), Munc13-4, Rab14 (D-5) (Santa Cruz Biotechnology); myosin IIA, actin (AC-15) (Sigma), VAMP7 (Synaptic Systems); LAMP2-AlexaFluor 488 (H4B4) (eBiosciences); perforin (Pf-344, for immunoblotting; Mabtech).
+ Open protocol
+ Expand
4

Protein Expression Analysis in Cell/Tissue Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates or mice skin homogenates were extracted using lysis buffer (10 mM Tris–HCl, 1 mM ethylene diamine tetra acetic acid (EDTA), 1% sodium dodecyl sulfate, 1% Nonidet P-40, 1 : 100 proteinase inhibitor cocktail, and 50 mM β-glycerophosphate, and 50 mM sodium fluoride) (Beyotime, Shanghai, China). The protein concentration was determined with a protein assay kit (Beyotime, Shanghai, China), following the manufacturer's instructions. Aliquots of 40 to 50 μg per sample were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA), and blocked with 5% bovine serum albumin (BSA) in PBST (PBS with 0.1% Tween). Then, they were incubated with the following primary antibodies overnight: RELM-α (Santa Cruz Biotechnology, Dallas, Texas, USA), CD63 (Santa Cruz Biotechnology, Dallas, Texas, USA), CD81 (Santa Cruz Biotechnology, Dallas, Texas, USA), Rab27a (Abcam, Cambridge, UK), pknox1 (Abcam, Cambridge, UK), and anti-GAPDH (Abcam, Cambridge, UK). Then, the membranes were incubated with a horseradish peroxidase-conjugated secondary antibody (Boster, Wuhan, China). The blots were visualized using an enhanced chemiluminescence kit (Amersham Biosciences, Piscataway, NJ, USA), according to the manufacturer's instructions.
+ Open protocol
+ Expand
5

Western Blot Analysis of Extracellular Vesicle Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins derived from cells and EVs were resolved using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS–PAGE), transferred onto nitrocellulose membranes, bound with primary antibodies, and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies. Protein bands were visualized using enhanced chemiluminescence detection reagents (34580, Thermo Scientific, Waltham, MA, USA). Primary antibodies against the following proteins were used: Alix (ab56932, Abcam, Cambridge, UK), CD63 (ab68418, Abcam), TSG101 (ab56932, Abcam), Synthenin-1 (ab133267, Abcam), β-actin (112620, Cell Signaling Technology, Danvers, MA, USA), PD-L1 (13684, Cell Signaling Technology), Rab27a (ab55667, Abcam), Rab11 (ab18211, Abcam), Rab7 (ab50533, Abcam), pan Ras (sc-166691, Santa Cruz, Santa Cruz, CA, USA), Rap1A (sc-398755, Santa Cruz), p-B-Raf (2696S, Cell Signaling Technology), B-Raf (9433S, Cell Signaling Technology), p-MEK (9154S, Cell Signaling Technology), MEK (9126S, Cell Signaling Technology), p-ERK1/2 (4370S, Cell Signaling Technology), ERK1/2 (4695S, Cell Signaling Technology), p-AKT (4060S, Cell Signaling Technology), and AKT (9272S, Cell Signaling Technology).
+ Open protocol
+ Expand
6

Exosomal Protein Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously22 . In brief, whole-cell lysates or exosomal proteins were separated by SDS–PAGE and transferred onto PVDF membranes. The membranes were blocked with 5% milk for 1 h at room temperature and then incubated with the corresponding primary antibodies overnight at 4 °C. The following antibodies were used: TSG101 (sc-136111, Santa Cruz, CA, USA), CD81 (sc-23962, Santa Cruz), Alix (92880, CST, MA, USA), ERK (4695, CST), p-ERK (4370, CST), Akt (9272, CST), p-Akt (4051, CST), STAT3 (12640, CST), p-STAT3 (9145, CST), EphA2 (6997, CST), EphA2 (398832, Santa Cruz), Rab27a (ab55667, Abcam, MA, USA), and β-actin (A1978, Sigma-Aldrich, MO, USA). After washing three times with TBST, the membrane was incubated with HRP-conjugated secondary antibodies at room temperature for 1 h. The signals were visualized with the ECL kit. CD81, Alix, and TSG101 were used as exosomal markers. β-actin was used as a loading control.
+ Open protocol
+ Expand
7

Cytotoxic Granule Trafficking Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used against perforin (dG9), lysosome-associated membrane protein (LAMP) 1–Alexa Fluor 488 (H4A3), CD3 (UCHT1), CD56 (HCD56), and NKG2D (1D11; BioLegend, San Diego, Calif); cation-independent mannose 6-phosphate receptor (CI-MPR; 2G11), dynein heavy chain, and Ras-associated binding protein (Rab) 27a (Abcam, Cambridge, United Kingdom); early endosome antigen 1 ([EEA-1] 14/EEA1; BD Biosciences, San Jose, Calif); cathepsin D, Rab7, and Rab9 (Cell Signaling, Danvers, Mass); LAMP1 (H4A3), LAMP2 (H4B4), granzyme B (GB7), Munc13-4, and Rab14 (D-5; Santa Cruz Biotechnology, Dallas, Tex); myosin IIA and actin (AC-15; Sigma, St Louis, Mo); vesicle associated membrane protein 7 (Synaptic Systems, Goettingen, Germany); LAMP2–Alexa Fluor 488 (H4B4) (eBioscience, San Diego, Calif); and perforin (Pf-344, for immunoblotting; Mabtech, Stockholm, Sweden).
+ Open protocol
+ Expand
8

Western Blot Analysis of RAB GTPases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cell pellet using ice-cold CelLytic M cell lysis reagent (Sigma-Aldrich, MO) containing 1% (v/v) protease inhibitor cocktail (Sigma-Aldrich, MO). After cell lysis, the protein concentration was determined by the Quick Start™ Bradford Protein Assay (Bio-Rad, CA). Approximately 10–50 μg whole cell lysates, mixed with 4×Laemmli SDS loading buffer, were electrophoresed in 10% SDS-PAGE gels and transferred to nitrocellulose membranes. The membranes were incubated with primary antibodies against human RAB12 (Thermo Fisher; rabbit polyclonal, 1:2,000), RAB27A (Abcam; rabbit polyclonal, 1:5,000), RAB31 (4D12. Santa Cruz; rabbit polyclonal, 1:2,000), RAB32 (Thermo Fisher; rabbit polyclonal, 1:2,000), RAB38 (A-8. Santa Cruz; mouse polyclonal, 1:2,000), MITF (D-9, Santa Cruz; mouse polyclonal, 1:5,000), or β-actin (Thermo Fisher; rabbit polyclonal, 1:10,000), followed by incubation with peroxidase-labeled donkey anti-rabbit secondary antibody (Thermo Fisher; 1:10,000) or mouse m-IgGκ BP-HRP (Santa Cruz; 1:10,000). Amersham ECL Prime Western Blot Detecting Reagent (GE Healthcare, CA) was used to visualize the protein bands.
+ Open protocol
+ Expand
9

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cellular or EV proteins were resolved by SDS-PAGE, transferred onto nitrocellulose membranes, and probed with the respective primary antibody against CD63 (1:1000; Abcam), beta-actin (1:20000; CST), ALIX (1:1000; CST), flotillin-1 (1:1000, CST), RAB27A (1:1000; Abcam), ETA (1:2000; Abcam), Akt (1:2000; CST), phospho-Akt (1:2000; CST), or PD-L1 (1:1000; CST). After removing the primary antibody and three washing steps at 10-min intervals, the blots were incubated with a horseradish peroxidase (HRP)-linked secondary antibody. The images were visualized using enhanced chemiluminescence (ECL) detection reagents (Thermo Scientific) and quantified using ECL hyper-film (AGFA) and Fusion FX7 system (Vilber Lourmat).
+ Open protocol
+ Expand
10

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protocol was described before [35 (link)–37 (link)]. Equal amounts of proteins (10 μg) or equal volumes of samples (15 μl, for biotinylation of surface protein assay or immunoprecipitation assay) were separated by SDS-PAGE (10% gel) and then transferred to polyvinylidene difluoride membranes (Millipore), membranes were incubated overnight at 4°C, treated with primary antibodies against N-type calcium channels (1: 200, rabbit polyclonal, Millipore), N-type calcium channels (1:500, mouse monoclonal, Santa Cruz), LAMP1 (1:1000, rabbit polyclonal, Sigma), Na+/K+ ATPase (1:1000, mouse monoclonal, Millipore), and Rab27a (1:1000, rabbit polyclonal, Abcam). β-actin (1: 10,000, mouse monoclonal, Abcam) was used as a loading control. The immunoblots were developed with enhanced chemiluminescence, and bands were visualized and analyzed by LabWorks 4.5 software on a UVP Bioimaging System (Upland). Quantification of results was performed by densitometry. Densitometric intensities of target proteins as well as loading controls (actin, Na/K ATPase or IgG) were quantified with LabWorks software. The optical density ratios of target proteins vs. loading controls were calculated and results were normalized to control values of 1.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!