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36 protocols using cobas fara

1

Measurement of Metabolic Biomarkers

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Blood glucose was measured using Ascensia Elite XL glucometers (Bayer AG, Zurich, Switzerland). Plasma insulin and leptin were measured by the ELISA method using appropriate kits from Crystal Chem. Inc (Elk Grove Village, IL, USA), Linco (now Millipore) (Burlington, MA, USA). Plasma triacylglycerol (TG), cholesterol (Chol), and glucose were measured by enzymatic methods with a centrifugal analyzer (Cobas FARA, Roche Diagnostica, Basel, Switzerland) using appropriate kits and calibration solutions from BioMérieux (Marcy-l’Etoile, France). Plasma free fatty acids were analyzed by Cobas FARA (Roche Diagnostica, Basel, Switzerland) using a NEFA C kit (Wako, Neuss, Germany).
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2

Standardized Lipid Biomarker Measurement

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Serum and EDTA-anticoagulant tubes were collected and processed using a standardized protocol, aliquoted, and stored at -70°C until time of use. Analysis was completed on all stored samples at the end of the study, and all samples for an individual were processed in the same batch to reduce measurement error. TG measurement was calculated using the glycerol-blanked enzymatic method on the Roche COBAS FARA centrifugal analyzer (Roche Diagnostics Corporation, IN). Hyper-triglyceridemia was defined as a baseline TG ⩾ 150 mg/dL. HDL measurement was calculated using the same procedure as TG measurement after precipitation of NHDL with magnesium/dextran. LDL measurement employed a homogeneous direct method (LDL Direct Liquid Select™ Cholesterol Reagent, Equal Diagnostics, PA) on a Hitachi 911 Automatic Analyzer.
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3

Serum Chemistry Analysis via Roche Cobas

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Clinical chemistry evaluations of blood serum samples were performed using a Roche Cobas Fara chemistry analyzer (Roche Diagnostic Systems, Westwood, NJ, USA) to numerically measure enzyme levels and metabolic entities.
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4

Measuring Serum ALT Levels

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Clinical chemistry evaluations of serum samples were performed using a Roche Cobas Fara chemistry analyzer (Roche Diagnostic Systems, Westwood, NJ) to numerically measure serum ALT enzyme levels (See Supplementary Table 2).
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5

Postprandial Lipid Challenge Protocol

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Participants were asked to abstain from using alcohol for at least 24 hours and fast for at least 12 hours before the PPL challenge. We obtained anthropometric measurements, assessed current medications, blood pressure, medical history, dietary history, and personal history. Blood was collected to obtain DNA for use in genotyping. Additional blood samples were collected before and during the PPL challenge for use in obtaining biochemical measurements. All samples (serum and EDTA-anticoagulant tubes) were centrifuged within 20 minutes of collection at 2000 × g for 15 min at 4°C and stored frozen at −70°C until time of use. Analysis was completed on all stored samples at the end of the study and all samples for an individual were processed in the same batch to reduce measurement error. TG measurements were calculated using the glycerol-blanked enzymatic method on the Roche COBAS FARA centrifugal analyzer (Roche Diagnostics Corporation, Basel, Switzerland).
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6

Lipid Profile Analysis in Venous Blood

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Venous blood samples were collected and analysed for total cholesterol, very-low-density lipoprotein (VLDL), high-density lipoprotein (HDL) and triglycerides at the MRCG@LSHTM clinical laboratories using a centrifugal biochemical analyser (Cobas Fara, Roche, UK). The Friedewald formula was used in calculating the level of LDL.
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7

Individualized Cooling Protocol: Metabolic Markers

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During the individualized cooling protocol, blood was collected at thermoneutrality and during mild cold exposure. Plasma concentrations of glucose (ABX Glucose HK CP, Radiometer, Horiba ABX, Montpellier, France), free glycerol (Glycerol kit; R-Biopharm, Darmstadt, Germany), and total glycerol (ABX Triglycerides CP, Radiometer, Horiba ABX) were determined on a COBAS FARA centrifugal spectrophotometer (Roche Diagnostics, Woerden, the Netherlands). Triglyceride levels were calculated using the difference in total and free glycerol. Plasma catecholamines were determined using reagents from Recipe (Recipe Chemicals and Instruments, München, Germany) and analyzed on a HPLC and by electrochemical detection. Serum insulin was analyzed with a Human Insulin-Specific RIA Kit (Millipore) on a Gamma Counter (2470 Automatic Gamma Counter Wizard; Wallac, PerkinElmer, Waltham, MA). The plasma inflammatory marker C-reactive protein (CRP) was measured with a particle-enhanced immunoturbidimetric assay on a COBAS c311 system (Roche Diagnostics GmbH, Mannheim, Germany), and IL-6 and IL-8 were measured with a chemiluminescent immunometric assay on an IMMULITE 1000 system (Siemens, München, Germany).
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8

Serum Biochemical Analysis Protocol

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Serum analysis used commercial kits according to the manufacturer’s instructions; alanine transaminase, albumin, bilirubin (Alpha Laboratories); aspartate aminotransferase and alkaline phosphatase (Randox laboratories). All kits were adapted for use on a Cobas Fara centrifugal analyser (Roche).
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9

Serum Biochemical Analysis Protocol

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Serum analysis used commercial kits according to the manufacturer’s instructions; alanine transaminase, albumin, bilirubin (Alpha Laboratories); aspartate aminotransferase and alkaline phosphatase (Randox laboratories). All kits were adapted for use on a Cobas Fara centrifugal analyser (Roche).
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10

Antioxidant Capacity Evaluation via FRAP Assay

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The FRAP assay was conducted using Roche Diagnostic Systems, Inc. (NJ, USA) COBAS-FARA (Software version 8529) centrifugal fast analyzer. A total of 300 μl of freshly prepared FRAP reagent was heated to 37°C. Initially, a blank reading was taken at 593 nm using a spectrophotometer. Samples were added at various concentrations, along with water (H2O), resulting in a final dilution ratio of 1/34. Absorbance readings were recorded at 593 nm at regular 15-s intervals throughout the monitoring period. To determine the change in absorbance at 593 nm, the final reading was subtracted from the initial M1 reading for each sample. This alteration in absorbance at 593 nm offers insights into the antioxidant capacity of the samples, where a greater change indicates higher antioxidant activity. The FRAP assay assesses the ability of antioxidants to reduce ferric ions to ferrous ions, serving as an indicator of their antioxidant potential [43 ].
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