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17 protocols using xfect mesc transfection reagent

1

Generation of Transgenic Reporter Cell Lines

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To generate stably integrated Gapdh and Dazl transgene reporter cell lines, either Gapdh- or Dazl- modified PiggyBac transposon (see Extended Experimental Procedures), and a helper plasmid expressing transposase, were transfected into mESCs cells using Xfect mESC Transfection Reagent (Clontech), according to the provider's protocol. Stably integrated reporter cells were selected with puromycin (2mg/ml) for four days.
To generate Dazl, Gapdh, miR290 and Sox2 SE reporter cell lines, targeting vectors and CRISPR/Cas9 were transfected into mESCs using Xfect mESC Transfection Reagent (Clontech), according to the provider's protocol. 48 hours following transfection, cells were FACS sorted for GFP or tdTomato expression (respectively), and plated on MEF feeder plates. Single colonies were further analyzed for proper and single integration by southern blot and PCR analysis.
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2

GFP-labeled ES Cell Generation

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ES cells (p3) were labeled by piggyBac transposon carrying CAG-EGFP-IRES-Neo36 (link). Plasmid and transposase (2.5 µg each) were transfected into ESCs using Xfect mESC Transfection Reagent (Clontech). Transfected cells were selected with 350 μg/ml G418 disulfate aqueous solution. GFP positive colonies were picked and established as GFP-labeled clones (p5).
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3

Tet1 and Rinf Expression in mESCs

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All ESC lines were cultured on irradiated feeders or on gelatin (0.2%) coated plates in media containing serum/LIF. ESCs stably expressing Rinf or Tet1-CD were generated by transfecting Rinf−/− ESCs with PiggyBac-hygro-mRinf-V5 or PiggyBac-hygro-Flag-mTet1-CD or empty vector using Xfect mESC transfection reagent (Clontech) and selecting with hygromycin (125ug/mL) for 10 days. For RNA and DNA extraction, ESCs were pre-plated to remove feeders and then seeded on gelatin overnight before harvest. For embryoid body (EB) formation assays, pre-plated ESCs were seeded in media without LIF in hanging drops for 3 days followed by culturing on non-adherent plastic surface for 3 days. EBs were harvested on day 6 for analyses.
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4

Tet1 and Rinf Expression in mESCs

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All ESC lines were cultured on irradiated feeders or on gelatin (0.2%) coated plates in media containing serum/LIF. ESCs stably expressing Rinf or Tet1-CD were generated by transfecting Rinf−/− ESCs with PiggyBac-hygro-mRinf-V5 or PiggyBac-hygro-Flag-mTet1-CD or empty vector using Xfect mESC transfection reagent (Clontech) and selecting with hygromycin (125ug/mL) for 10 days. For RNA and DNA extraction, ESCs were pre-plated to remove feeders and then seeded on gelatin overnight before harvest. For embryoid body (EB) formation assays, pre-plated ESCs were seeded in media without LIF in hanging drops for 3 days followed by culturing on non-adherent plastic surface for 3 days. EBs were harvested on day 6 for analyses.
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5

Directed Differentiation of mESCs

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pCMV-dCAS9-VP64 vector (C9V64) and sgCdx2Ps vector were co-transfected into OG2 mESCs using Xfect™ mESC Transfection Reagent (Clontech) as mentioned above. pcDNA3.1 and pCMV-Cdx2 vector were used as negative and positive control, respectively. The following day, the ESCs were dissociated into single cells and seeded to 1 × 104 (link) on 35 mm tissue culture dishes with feeder layer. After another day, the culture medium was refreshed with TSC-1640 medium, and performed every other day. After TSC colony formation, the medium was changed to TSC-X medium. Endogenous Gata6 was activated the same way with XEN medium replaced 1 day after transfection.
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6

Immunofluorescence of Transfected ES Cells

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The immunostaining on testis cryosections is as described [54 (link)]. Ezh2KO and EzhDKO ES cells were transfected with FLAG-tagged EZH variants using Xfect™ mESC Transfection Reagent (631320, Clontech) according to manufacturer’s instruction. The cells were trypsinized and resuspended in ES cell medium 48 h post-transfection. ES cells were fixed on slides by adding three volumes of 2% PFA (containing 0.1% Triton X-100 and 100 mM sucrose in 1 × PBS) at 4 °C for 30 min. The slides were air-dried and stored at 4 °C for immunofluorescence assays.
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7

Transfection and Luciferase Assay of Oct4 Enhancers

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Mouse Oct4 proximal and distal enhancers were cloned into pGL3 as previously characterized (Tesar et al., 2007 (link)). Constructs were co-transfected with pRL-TK (Renilla) using Xfect mESC transfection reagent (Clontech) and incubated for 48 hours. Luciferase activity was assessed using the Dual-Glo Luciferase
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8

Transfection of Wild-type and Dnmt2 KO MEF Cells

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Wild-type and Dnmt2 KO MEF cells were prepared as described [13 (link)] and were grown in standard Dulbecco's modified Eagle's media containing 10% fetal bovine serum and supplemented with 2 mm Glutamate in a 5% CO2 incubator. The cells were grown to 90% confluence and split into a six-well plate prepared with cover slides at a seeding density of 1×106 cells per well. Afterwards, the cells were grown for another 24 h in Dulbecco's modified Eagle's medium to reach ~50% confluence. Then, the MEF cells were transfected with a fluorescent reporter construct (yellow fluorescent protein (YFP) and cyan fluorescent protein (CFP)) with and without poly-Asp6-coding sequence at their N-terminal side using Xfect mESC Transfection Reagent (Clontech, Mountain View, CA, USA) following the instructions of the supplier. The medium was exchanged 3 h after transfection.
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9

Generation and Maintenance of Murine ES Cells

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Murine wild type (WT) CJ7, Ezh2−/−and Eed−/− ES cells were the gift of the Orkin Lab (Harvard Medical School, Boston, MA) (Shen et al., 2008 (link)). EloA−/−, EloA+/− and WT CCE mES cells were kindly provided by Dr. Teijiro Aso (Kochi Medical School, Kochi, Japan)(Yasukawa et al., 2012 (link)). Cells were grown and maintained on 0.2% gelatin coated MEF-seeded 6-well plates in ES-media (1× DMEM knockOut medium, 15% hyclone FBS, 1× GlutaMAX, 1× NEAA, 1× pen/strep, 1–1.6×103 Units/ml of mLIF (Millipore), 55μM 2BME supplemented with 1μM and 3μM of PD0325901 and CHIR99021, respectively. Mouse embryonic fibroblast 3T3-L1 cells (ATCC CL-173) were grown in DMEM with 10% FCS. Transient or stable cell line transfection of mESC and 3T3-L1 cells was done using Xfect mESC transfection reagent and Xfect transfection reagent (Clontech Laboratories), respectively, according to the manufacturer’s instructions.
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10

Efficient Genome Editing in OG2 ESCs

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U6-sgCdx2-hCAS9 and donor vectors in ratio of 1:3 (w/w) were transfected into OG2 ESCs using Xfect™ mESC Transfection Reagent (Clontech) as instructed. U6-sgCdx2-hCAS9 contained a Neomycin gene (neo), conferring G418 resistant ability to the transfected cells. ESC medium was refreshed everyday with 800 μg/mL G418 (Sigma) for one week. G418 resistant colonies were retrieved for further culture. Portion of each colonies was collected for genomic PCR to detect 2A-td Tomato insertion. The primers are ROPG-F: 5′-TTGATTTATGGAAAGGAGGGGTGC-3′ and ROPG-R: 5′-GTGGAGGTGGGAGTGGGAAGATAATG-3′.
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