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5 protocols using high affinity ni charged resin

1

SARS-CoV-2 Spike Protein and Fab Production

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DNA fragment encoding ectodomain of S from SARS-CoV-2 with the disruption of S1/S2 furin cleavage site and the substitutions of six amino acids with proline (F817P, A892P, A899P, A942P, K986 P, V987P) was placed into the mammalian expression vector pCAGGS with N-terminal signal peptide (S-6P). The C terminus was engineered with a thrombin site (LVPRGS) linked by a folded trimerization motif (YIPEAPRDGQAYVRKDGEWVLLSTFL) and a 6×His Tag. The S-6P plasmid was transiently transfected into Expi293 cells using PEI reagent. The cell supernatants containing spike protein were harvested 108 h after transfection, clarified by centrifuge (20 min at 8000 × g, 4 °C), and filtered through a 0.45 μm filter. The soluble S proteins were recovered using 2 ml of High-Affinity Ni-charged Resin (GenScript), further purified by passage over SuperoseTM 6 Increase 10/300GL (Cytiva).
Variable regions of heavy and light chains were cloned into a Fab expression vector and sequence-corrected plasmids were transiently co-transfected into Expi293 cells with a ratio of 1:1. At 144 h post-transfection, cell supernatants were collected and secreted Fabs were purified with High-Affinity Ni-charged Resin (GenScript), following the purification by gel filtration of SuperoseTM 200 Increase.
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2

Recombinant Lactoferrin Production and Purification

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A yeast colony surviving the two selection requisites was grown in YPD medium supplemented with 200 μg/mL zeocin at 30 °C at 250 rpm for 24 h. Then, the cells were harvested by centrifugation and incubated at a seeding density of 0.1–0.2 optical density in BMMY medium at 30 °C to induce the expression of rhLf-h-glycan. Methanol was added to a final concentration of 0.5% (v/v) every 24 h for 96 h to maintain the induction. After 96 h, the cells were collected by centrifugation at 5000 rpm for 10 min at 4 °C. The cell-free yeast culture supernatant was dialyzed against PBS pH 7.4 for 16 h. After dialysis, the protein extracts were purified using a high-affinity Ni-Charged Resin (GenScript) according to the manufacturer directions to obtain His-tagged rhLf-h-glycan recombinant proteins. The derived purified protein was dialyzed and concentrated simultaneously with ultracentrifugation filters (Amicon, Sigma Aldrich) following the vendor’s conditions. The content of endotoxin levels in the purified rhLf-h-glycan was measured with ToxinSensor Chromogenic LAL Endotoxin Assay Kit (GenScript) based on the manufacturer’s guidelines.
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3

Overexpression of MSP1E3D1 in E. coli

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A pET-based plasmid for the over-expression of MSP MSP1E3D1 (#20066) was obtained from Addgene (Watertown, MA). Dimyristoylphosphatidylcholine (DMPC) was purchased from Avanti Polar Lipids, Inc. (Alabaster, AL). Sephadex® G-25 was purchased from EMD Millipore/Sigma-Aldrich (Milwaukee, WI). High affinity Ni-charged resin was purchased from GenScript Biotech Corporation (Piscataway, NJ). Sodium trichloroacetate was purchased from Alfa Aesar (Haverhill, MA). HiLoad™ 16/600 Superdex™ 200 column was purchased from Cytiva Life Sciences (Piscataway, NJ). All other reagents were of standard laboratory grade.
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4

Cloning and Expression of C-NuMA Protein

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Based on our standard lab procedures described in detail before [5 ], the cDNA encoding the open reading frames of C-terminal peptide (C-NuMA, amino acid residues 1522-2115) was achieved by RT-PCR, using extracted total RNA from HEK293 cells as a template. Then, the cDNA of C-NuMA was amplified using adopter primers with the EcoRI and HindIII recognition sequences. The particular sequences of primers were as follows:

5’-GAA TTC ATG GGA AGA ACT GAG-3’ (forward primer of C-NuMA, EcoRI restriction site);

5’-AAG CTT GTG CTT TGC CTT GC-3’ (Reverse primer of C-NuMA, HindIII restriction site).

The obtained PCR product was cloned into pET-28a (+) vector (prokaryotic expression vector preserved by our lab), and were over-expressed in E.coli BL21 (DE3). The expression products were purified by high affinity Ni-charged resin (GenScript, NJ, China) and then stored at -80°C freezer for further analysis.
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5

Protein Purification and Immunodetection Protocol

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Restriction enzymes (SalI, BamHI), T4 DNA ligase, dNTPs, Wizard® SV Gel and PCR Clean-Up System, Wizard®Plus Minipreps DNA Purification System, and trypsin were purchased from Promega (Madison, CA, USA). Phusion™ highfidelity DNA polymerase came from the New England Biolabs, Ltd (Beijing, People's Republic of China). High affinity Ni-charged resin came from GenScript Inc. (Nanjing, People's Republic of China). Goat anti-mouse IgG-horseradish peroxidase (HRP) conjugate, goat anti-rabbit IgG-HRP conjugate, and goat anti-human IgG-HRP conjugate came from Bethyl Laboratory Inc. (Houston, Texas Area, USA). Whatman™ nitrocellulose (NC) membrane came from GE Healthcare (Dassel, Germany). The monocomponent 3,3′,5,5′-tetramethylbenzidine (TMB) substrate was produced by XinBoSheng Company (ShenZhen, People's Republic of China). BeyoECL Plus was obtained from Beyotime Company (Nantong, People's Republic of China). The Timesaver mRNA purification system, 3-[(3cholamidopropyl)-dimethylammonium]-propane-sulfonate (CHAPS), protease inhibitor mix, IPG buffer, 24-cm linear IPG strips pH 3-10, and Tris were obtained from GE Healthcare (Piscataway, NJ, USA). The SuperScript™ Choice System came from Invitrogen (Carlsbad, CA, USA). Other chemical reagents were purchased from Sigma-Aldrich (St. Louis, USA).
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