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Ki67 clone b56

Manufactured by BD
Sourced in France, United Kingdom

The Ki67 (clone B56) is a monoclonal antibody used in immunohistochemistry and flow cytometry applications to detect the Ki-67 protein, which is a cellular marker for proliferation. The Ki-67 protein is present during all active phases of the cell cycle (G1, S, G2, and mitosis), but is absent from resting cells (G0). This antibody can be used to identify and quantify the fraction of proliferating cells within a given cell population.

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11 protocols using ki67 clone b56

1

Multiparametric Flow Cytometry of Splenic and Lymphoid Immune Cells

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Single cell suspensions of lymphocytes isolated from the spleen, MLN, or PEC of uninfected and infected infant mice were stained with optimal concentrations of the following antibodies and reagents: CD3ε (clone 145-2C11), CD8α (clone 53-6.7), CD25 (clone PC61), CD44 (clone IM7), CD62L (clone MEL-14), CD69 (Clone H1.2F3), TNF-α (clone MP6-XT22), IFN-γ (clone XMG1.2), pTyr (clone pY20), ZAP-70 (clone 1E7.2), phosphorylated ZAP-70 (pZAP-70) Tyr319 (clone n3kobu5; eBioscience), Erk2 (clone REA186; Miltenyi Biotec), phospho-Erk-1/2 (pErk1/2) Thr202/Tyr 204 (clone 4B11B69), c-Rel (clone REA397; Miltenyi Biotec), Ki-67 (clone B56; BD Biosciences), annexin V, and 7-aminoactinomycin D (7-AAD). All antibodies and reagents were from BioLegend unless otherwise specified. Dead cells were excluded from the analysis by staining with Zombie Aqua (BioLegend). Cells were analyzed on a Fortessa flow cytometer (Becton Dickinson) using CellQuest™ software. Data were analyzed using FlowJo v10 analysis software (TreeStar).
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2

Comprehensive Flow Cytometry Panel for Murine Immune Cells

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The following antibodies were used to perform flow cytometry on mouse cells (all antibodies are from Biolegend unless indicated otherwise): anti-CD3 (clone 17A2), CD4 (clone RMA-4), CD8 (clone 53–6.7), CD11a (clone I21/7), CD11b (clone M1/70), CD25 (clone PC-61), CD45RB (clone C363–16A), CD49d (clone R1–2), CD62L (clone MEL-14), CD44 (clone IM7), 104) (clone A20), CD45.2 (clone 104), CD90.2 (clone 53–2.1), CD107a (clone 1D4B), CD107b (clone M3/84), ARG1 (clone A1exF5, ThermoFisher), GPT2 (clone 16757-1-AP, ThermoFisher), FoxP3 (clone 150D), GR1 (clone RB6–8C5), IL-2 (clone JES6-SH4), IL-4 (clone 11B11), IL-10 (clone JESS-16E3), IL-17A (TC11–18H10.1), IFNg (clone XMG1.2), live/dead near IR ( L10119 Thermo Fisher), Ki67 (clone B56, BDbiosciences), Ly6C (clone HK1.4), Ly6G (clone 1A8), pS6 (clone D68F8, Cell Signaling Technology), TCRb (clone H57–597), T-bet (Tbx21, clone 4B10), TNFa (clone MP6-XT22). The influenza PR8-specific NP311–325 tetramer conjugated to BV421 was kindly provided by the NIH tetramer core facility.
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3

Immunophenotyping of Hematological Cells

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Human recombinant interleukin (IL)-2 was purchased from R&D Systems (Minneapolis, MN, USA), interferon-alpha-2b (IFN- α, IntronA) from Merck Canada Inc. (Kirckland, Canada), IL-6, IL-10 and IL-15 from PeproTech (Rocky Hill, NJ, USA). Mouse monoclonal antibodies (mAbs) conjugated to allophycocyanin (APC), fluorescein isothiocyanate (FITC), peridinin chlorophyll protein-cyanin 5.5 (PerCP-Cy5.5), phycoerythrin (PE) or Pacific Blue (PB), and specific for human CD19 (clone HIB19), CD24 (clone ML5), CD27 (clone M-T271), CD30 (clone BerH8), CD31 (clone WM59), CD38 (clone HIT2), CD56 (cloneB159), CD117 (clone 104D2), CD138 (clone RF8B2), IgG (clone G18-145), IgM (clone G20-127), lambda Ig light chain (clone JDC-12), kappa Ig light chain (clone TB28-2) and Ki67 (clone B56) were purchased from BD Biosciences (Le Pont De Claix, France); for CD200 (clone OX104) from eBiosciences (San Diego, CA, USA); for CD20 (clone B9E9), CD45 (clone J33), CD126 (clone M91) and CD138 (clone B-A38) from Beckman Coulter (Fullerton, CA, USA); for IRF4 (clone IRF4.3E4) and FCRL4 (clone 580810) from BioLegend (San Diego, CA, USA); for IgA, IgM, and IgG (polyclonal goat Abs) from Southern Biotech (Birmingham, AL, USA).
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4

Comprehensive Immune Cell Profiling

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Samples were washed twice in PBS prior to staining with LIVE/DEAD (Life Technologies) for 10 min at room temperature. Samples were then blocked with 5 μg/mL anti CD16/32 (clone 2.4G2; produced in house) and heat‐inactivated mouse serum (1:10) in FACs Buffer (dPBS containing 0.5% BSA (Sigma), 2mM EDTA (Sigma)) cell surface markers for several different cell populations were detected by addition of various flourochrome‐conjugated antibodies (See Supporting Information Table I for list of antibodies used) for 20–30 min on ice. Samples were washed in FACs buffer prior to intracellular staining which was performed following fixation in either 2% formaldehyde for 10 min at room temperature or 1× Fixation/Permeabilization buffer (eBioscience) overnight followed by permeabilization using 1× permeabilization buffer (eBioscience). Antibodies to detect intracellular proteins (including Ki67 clone B56 from BD) were incubated with samples on ice in permeabilization buffer (eBioscience) for 30 min. Samples were acquired using a BD LSR II. Macrophages were gated as CD19Ly6GSigFTCRβF4/80hiMHC‐IIlo, Eosinophils were gated as SigF+SSChiMHC‐II, ILC were gated as CD3CD11cB220Ly6GLy6CF4/80CD11cNK1.1Ter119CD5CD11bCD49bCD45.2+CD90.2+.
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5

Multiparametric B Cell Immunophenotyping

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Nine parameter flow cytometric analysis was performed on 200uL of whole blood. Lymphocytes were assessed by forward and side scatter, and stained for the following: anti-CD19-PECy5 (clone HIB19),anti- CD20- APC-H7 (clone L27), anti-CD10- APC (clone HI10a), anti-CD21- PE (clone B-ly4), anti- CD27- PECy7 (clone M-T271) (all from BD Biosciences, San Jose, CA) and anti-CD38- Alexa Fluor 700 (clone HIT2, Biolegend, San Diego, CA). At least 20,000 CD19+ B cells events were acquired on an LSRII cytometer driven by FACSDiVa version 6.2 software. Analysis was performed using FlowJo Version 10 software. BD TruCOUNT (BD Biosciences) beads were used for absolute counts of CD19+ B cells. For CD86 FITC (clone 2331, BD Biosciences, San Jose, CA) whole blood was stained for 10 minutes in the dark at room temperature, then lysed for 2 minutes with 2mL of BD Lyse (BD Pharmigen, San Diego, CA) and washed with 2mL of 0.1% BSA+ PBS, then fixed with 200uL of BD Stabilizing Fixative (BD Biosciences). For Ki-67(clone B56, BD Biosciences),whole blood was stained as above, but permeabilized with BD Cytofix/Permeabilization (BD Biosciences) on ice for 20 minutes, washed with 2mL of Perm Wash (BD Biosciences) and stained with 20uL of anti-Ki-67 FITC for 30 minutes on ice, washed twice with 2 mL of Perm Wash and fixed.
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6

Multiparameter Phenotypic Characterization of PBMCs

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Thawed PBMCs were surface stained with Aqua amine reactive viability dye (Invitrogen) and mAbs to CD45 (clone D058–1283, BD Biosciences), CD3 (clone SP34–2, BD Biosciences), CD4 (clone L200, BD Biosciences), CD8 (clone 3B5, Invitrogen), CD95 (clone DX2, BioLegend), CD28 (clone CD28.2, Beckman), CD127 (clone hIL-7R-M21, BD Biosciences), PD-1 (clone EH12.2H7, BioLegend), and HLA-DR (clone L243, BD Biosciences) for 20 min at room temperature, fixed, and then permeabilized with FoxP3 Fix/Perm Buffers (eBioscience) per the manufacturer’s instructions. Permeabilized cells were then stained intracellularly for Ki67 (clone B56, BD Biosciences) and FoxP3 (clone PCH101, eBioscience) for 30 min at 4°C, washed in FoxP3 Perm/Wash buffer, fixed in 0.5% paraformaldehyde and analyzed by flow cytometry on a BD LSRII flow cytometer (BD Biosciences) and analyzed using Flowjo Software (Tree Star Inc).
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7

Monocyte-Cancer Cell Co-Culture Assay

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T47D and MDA-MB-231 (5 × 104) cells were labeled with CellTracker Red CMTP (Molecular Probes) according to the manufacturer's instructions and plated in 8 well culture slides (Corning) in DMEM supplemented with 10% fetal calf serum (FCS) the previous day. Two hours before adding CellTracker Green CMFDA (5-chloromethylfluorescein diacetate, Molecular Probes) labeled human monocytes at a ratio of 1:1 (initial amount of cancer cells:monocytes), the medium was replaced with RPMI without serum. The cells were cultured for two days, fixed with ice-cold methanol, stained with Hoechst and imaged for cell number changes. Five 10× microscopic fields for each donor (n = 3, in triplicates) were counted based on the Hoechst stain, using ImageJ software. Co-localization of green signal with Hoechst stain accounted for monocytes, which were therefore excluded from the analysis.
For Ki67 staining the cells in direct co-culture were left unlabeled and cultured as above. The cells were fixed with methanol and stained for Ki67 (clone B56 1:100, BD Biosciences) according to the above-mentioned protocol. To exclude that the added monocytes did not contribute to the Ki67 signal, the monocytes were cultured in parallel with cancer cell conditioned medium and stained for Ki67.
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8

Comprehensive Cell Cycle and Surface Marker Analysis

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For cell cycle analysis, ~1×106 viable dissociated cells were plated and treated with 1 µM EdU for 2 h. Cells were then washed with PBS, incubated with Zombie Aqua viability dye (Biolegend) or Live/Dead fixable far red dead cell stain kit (Life Technologies) for 20 min, washed with PBS, and then fixed with ice-cold 70% ethanol. Staining for EdU was performed using the Click-iT EdU Flow Cytometry Assay kit (Life Technologies) according to the manufacturer’s protocol. DNA content was visualized using FxCycle Violet (Life Technologies). Ki67 (clone B56, BD Biosciences) was stained for 30 min at ambient temperature. For surface marker analysis, cells were washed with PBS and stained with antibodies against CD15 (VIMC6, Miltenyi Biotec), CD133/1 (AC133, Miltenyi Biotec), or PDGFRα (16A1, BioLegend) for 30 min at 4 °C . Gates were determined using an unst ained control, where ~2% of cells were considered positive. All experiments were performed with at least two biological replicates.
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9

Multiparameter flow cytometric analysis of immune cells

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Single cell suspensions were incubated with 100 µL diluted antibodies for 30 min at 4°C in ice-cold fluorescence-activated cell sorting (FACS) buffer (0.5% bovine serum albumin, 2 mM EDTA in PBS) with ‘cocktails’ of the following antibodies: CD45 clone 30-F11, CD3e clone 145–2 C11, CD4 clone RM4-5, CD62L clone MEL-14, CD44 clone IM7, CD8a clone 53–6.7, B220 clone RA3-6B2, CD23 clone B3B4, CD19 clone 1D3 and CD5 clone 53–7.3 (all from eBiosciences), CD21 clone 7G6 (BD biosciences) and CD11c clone N418, F4/80 clone BM8, CD64 clone X54-5/7.1 and NK1.1 clone PK136. Intracellular staining for Ki67 clone B56 (BD Biosciences) and pS6 PE and pAKT Alexa Fluor 488 (Cell signalling) was performed by using the Cytofix/Perm kit (BD biosciences) and Fixation/Permeabilization Buffer set (ebiosciences) according to the manufacturer’s protocol. Cells were resuspended in FACS buffer and then analysed using a Cyan-ADP (Dako) or Fortessa (BD) with forward/side scatter gates set to exclude non-viable cells. Cells of interest were sorted by using BD FACSAria. Data were analysed with FlowJo software (Tree Star).
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10

Multiparameter Flow Cytometry Immunophenotyping

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Flow cytometric analysis was carried out using the following reagents: Live/dead UV Zombie, KLRG1 APC (2F1), CD4 Brilliant Violet 711 (OKT-4), CD28 Brilliant Violet 510 (CD28.2) and CD45RA PECy7 (HI100) all from Biolegend. CD28 Brilliant Violet 786 (U28), CD3 PECF594 (UCHT1), CD8 APC-H7 (SK1), CD57 Alexa Fluor 421 (NK-1), and human cutaneous lymphocyte antigen (CLA) FITC (HECA-452) from BD Biosciences. Cell suspensions were incubated with antibody solutions for 30 min at 4°C for extracellular staining. Intracellular staining for Ki67 (clone B56, BD Bioscience) was performed with Foxp3 Staining Buffer Set (Miltenyi Biotec, Bisley, UK). Cytokine and anti-hTERT (rabbit IgG—Abcam) staining were performed using Fix and Perm Cell Permeabilization Kit (Invitrogen, Paisley, UK) according to the manufacturer's protocol. Samples were processed at Fortessa X-20 cytometer (BD Biosciences) and analyzed using FlowJo software (Treestar). Isotype control staining and fluorescence-minus-one controls were used to set the quadrants.
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