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7 protocols using tissue protein extract

1

Comprehensive Protein Extraction and Analysis

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Total protein extraction from mammary and colonic tissues and western blotting were performed according to previous studies [19 (link), 20 (link)]. In brief, mammary and colonic samples were weighed and homogenized using tissue protein extract (Thermo Fisher Scientific, USA). After centrifugation at 12,000×g and 4 °C for 10 min, the supernatants were harvested, and protein concentration determination was determined using a BCA Protein Assay Kit (Thermo Fisher Scientific, USA). SDS-PAGE (12% or 15%) was performed to separate the targeted proteins according to molecular size. The targeted proteins were transferred to 0. 45-μm PVDF membranes and treated with 5% skim milk for 3 h at room temperature. Furthermore, specific primary antibodies, including p-p65, p-65, p-IκB, IκB, STING, p-TBK1, TBK1, p-IRF3, IRF3, occludin, ZO-1, and claudin-3 from Affinity Biosciences (OH, USA); TLR4, cGAS, NLRP3, ASC, and IL-1β from Cell Signaling Technology (Boston, USA); and β-actin from Immnoway Biotechnology (USA), were added for incubation at 4 °C overnight. After incubating with secondary antibodies (goat anti-rabbit IgG or rabbit anti-mouse IgG, Immnoway Biotechnology, USA) for 2 h at room temperature, the proteins were detected using an ECL plus western blotting detection system.
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2

Protein Extraction and Western Blot Analysis

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Total protein samples were collected by a tissue protein extract (Thermo Fisher Scientific, USA), and protein concentrations were measured using a BCA protein assay kit (Thermo Fisher Scientific, USA). Targeting proteins were separated using 10% SDS-PAGE based on molecular size, and then proteins were bonded to 0.45-μm polyvinylidene fluoride (PVDF) membranes. After blocked in 5% skim milk for 3 h at room temperature, PVDF membranes were incubated with specific primary antibody (1:1000 for AhR, Cyp1a1, p-p65, p-IκB, p65, IκB, and β-actin) at 4°C overnight. Further, PVDF membranes were incubated with goat anti-rabbit IgG (1:20,000) for 2 h at room temperature after washing three times with TBST (Tris-buffered saline with Tween 20). Finally, proteins were tested using ECL plus the Western blotting detection system.
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3

Western Blotting of Placental and Ileal Proteins

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Western blotting of the total proteins extracted from placental or ileal tissues was conducted in line with a previous protocol [46 (link)]. In brief, placental or ileal tissues were homogenized with the tissue protein extract (Thermo Fisher Scientific, USA) and then centrifuged at 12,000 × g and 4 °C for 10 min to obtain the supernatants. The protein contents in these supernatants were measured using the BCA Protein Assay Kit (Thermo Fisher Scientific, USA). Targeted proteins were separated through 12% SDS-PAGE based on molecular size and then transferred onto the 0.45-μm PVDF membranes. Afterward, membranes were blocked using 5% defatted milk under ambient temperature for 3 h. Additionally, corresponding primary antibodies for antioxidant, apoptosis, ERS, autophagy, and voltage-dependent anion channel (VDAC) or β-actin were introduced for overnight incubation under 4 °C. Following 2-h incubation using goat anti-rabbit IgG secondary antibodies under ambient temperature, the ECL plus western blotting detection system was employed for protein detection. Protein expression was standardized to VDAC or β-actin expression and normalized to the mean ± SEM of the CON group. Table S3 presents more details about antibodies.
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4

Quantifying Protein Levels by Western Blot

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Total protein samples were collected by using tissue protein extract (Thermo Fisher Scientific, USA), and the protein concentrations were measured using a BCA Protein Assay Kit (Thermo Fisher Scientific, USA). Target proteins were separated using 10% or 15% SDS-PAGE based on molecular size and then the proteins were bonded to 0.45 μm PVDF membranes following methanol treatment. After being blocked in 5% skim milk for 3 h at room temperature, the PVDF membranes were incubated with specific primary antibodies (1:1000 for AHR, Cyp1a1, p-p65, p-IκB, p65, IκB and 1:4000 for β-actin) at 4°C overnight. Furthermore, the PVDF membranes were incubated with Goat anti-rabbit IgG (1:20000) for 2 h at room temperature after being washed three times with TBST. Finally, the proteins were identified using the ECL plus western blotting Detection System.
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5

Mammary Gland Protein Expression Analysis

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Western blotting was performed according to previously described methods [6 (link)]. In brief, the total proteins from the mammary gland samples were extracted by a tissue protein extract (Thermo Fisher Scientific, USA). Ten percent or 15% SDS-PAGE was performed followed by transfer to 0.45 μm PVDF membranes. After blocking with 5% skim milk for three hours at 37°C, specific antibodies at a final concentration of 1:1000, including ZO-1, Occludin, Claudin-3, S100A8, ac-H3 and β-actin, were incubated overnight at 4°C. The PVDF membranes were then incubated with goat anti-rabbit or rabbit anti-mouse IgG (1:20000) and analyzed using the ECL plus western blotting detection system (Tanon, China) after washing with TBST.
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6

Protein Extraction and Western Blot Analysis

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Total protein samples were collected by a tissue protein extract (Thermo Fisher Scientific, USA), and protein concentrations were measured using a BCA protein assay kit (Thermo Fisher Scientific, USA). Targeting proteins were separated using 10% SDS-PAGE based on molecular size, and then proteins were bonded to 0.45-μm polyvinylidene fluoride (PVDF) membranes. After blocked in 5% skim milk for 3 h at room temperature, PVDF membranes were incubated with specific primary antibody (1:1000 for AhR, Cyp1a1, p-p65, p-IκB, p65, IκB, and β-actin) at 4°C overnight. Further, PVDF membranes were incubated with goat anti-rabbit IgG (1:20,000) for 2 h at room temperature after washing three times with TBST (Tris-buffered saline with Tween 20). Finally, proteins were tested using ECL plus the Western blotting detection system.
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7

Murine Mastitis Model Optimization

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TNF-α and IL-1β ELISA kits were purchased from Biolegend (CA, USA). Tissue protein extract and BCA Protein Assay Kit were bought from Thermo (Thermo, MA, USA). Trypticase Soy Broth (TSB) and bacillus medium were purchased from Qingdao Haibo Biotechnology Co., Ltd (Qingdao, China). Crystal Violet Stain solution, 1% was acquired from Solarbio (Solarbio, Beijing, China). All the monoclonal antibodies, including β-actin, p65, IκB, the phosphorylation of p65, phosphorylation IκB, ZO-1, Occludin, and Claudin-3 were recruited from Cell Signaling Technology (Beverly, MA, USA). MPO kit was available from Nanjing Jiancheng Co., Ltd (Nanjing, China). Animals A total of 60 Balb/c mice (40 females and 20 males) aged 6-8 weeks were purchased from the Liaoning Changsheng Biotechnology Co. Ltd. The animal experiments were subject to approval by the Animal Ethics Committee of Jilin University (KT202103058). Females and males are mixed in miniature isolation cages in about a ratio of 2 to 1 after adapting to the environment with free food and water. The mastitis model was established complying with the experimental animal manual. This study is built on the Handbook on the Care and use of Experimental Animals published by the National Institutes of Health.
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