The largest database of trusted experimental protocols

16 protocols using p jnk

1

Molecular Pathways Exploration in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fetal bovine serum (FBS), fibroblast growth factor, heparin and trypsin-EDTA were procured from Invitrogen Bioservices, India. Linalool, monoclonal antibodies such as p-ERK1, p-JNK, p-p38, IκBα, NF-κB, TNF-α, IL-6, IL-10, COX-2, Bax, Bcl-2, p53, MMP-2, MMP-9,β-actin, lamin-A and goat anti-mouse IgG-HRP polyclonal antibody, 3-(4, 5-dimethyl-2-thiaozolyl)-2,5-diphenyl-2H tetrazolium bromide (MTT), 2,7-diacetyl dichlorofluorescein (DCFH-DA) were purchased from Sigma chemical Co., St. Louis, MO, USA.
+ Open protocol
+ Expand
2

Western Blot Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Four fold of SDS-PAGE sample buffer (200 mM Tris pH 6.8, 8 % SDS, 0.4 % bromophenol blue, 40 % glycerol, 400 mM β-mercaptoethanol) was added to the sample to a final concentration of 1 fold and then heated at 100 °C for 5 min. Proteins were separated on 10 % polyacrylamide gels and transferred onto a 0.45 μm-pore-size polyvinylidene difluoride membrane (Millipore, Billerica, MA) for western blotting. The membrane was incubated for 1 h at room temperature with an antibody against any of the following proteins: BRF1/2, phosphorylated p38 (p-p38) MAPK T180/Y182, p-p44/42 MAPK (all from Cell Signaling), hnRNPC1/C2, MKP-1, ERK1, JNK1 (all from Santa Cruz Biotechnology), total-p38, p-JNK, Flag M2 (all from Sigma-Aldrich), Ttp, Zfp36l1, Zfp36l2, and β-tubulin [26 (link)]. After washing with PBST (PBS containing 0.1 % (v/v) Tween 20) for an appropriate time, the membrane was incubated for 1 h at room temperature with a horseradish peroxidase–conjugated secondary antibody: goat anti-rabbit IgG (KPL, Gaithersburg, ML), goat anti-mouse IgG (KPL), or rabbit anti-goat (Sigma-Aldrich). Western Lightning enhanced chemiluminescence substrate (Perkin Elmer, Norwalk, CT) was used for detection.
+ Open protocol
+ Expand
3

Comprehensive Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates were prepared according to standard protocols. Lysed protein was resuspended in denaturing protein-loading buffer. Proteins were separated by SDS-PAGE and transferred to PVDF membranes (Millipore). The following antibodies were used: pEGFR (Tyr1068 CST #3777; clone D7A5; 1/1000; Tyr1173 CST#4407; clone 53A5; 1/1000), EGFR (CST #4267; clone D38B1; 1/500), pJNK (CST #9255; clone G9; 1/2000), JNK (CST #9252; 1/1000), pp38 (CST #4631; clone 12F8; 1/1000), p38 (CST #9212; 1/1000), pIKKα/β (CST #2697; clone 16A6; 1/1000), IKKβ (CST #2370; clone 2C8; 1/1000), pNF-κB (CST #3033; clone 93H1; 1/1000), NF-κB (CST #3034; 1/1000), pStat3 (CST#9145; clone D3A7; 1/2000), Stat3 (sc-7179; 1/1000), Actin (Sigma A2066; 1/1000), α-Tubulin (Sigma T9026; clone DM1A; 1/500).
+ Open protocol
+ Expand
4

Western Blotting Analysis of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was conducted as previously described [40 (link)] using antibodies from the following sources: V-ATPase V1E1 (Cat. HPA029196) from Sigma, USA; p-JNK (Thr183/Tyr185, Cat. 9251), extracellular signal-regulated kinase (ERK) (Cat. 9102), p-ERK (Cat. 9101), p-paxillin (Tyr 118, Cat. 2541), cleaved-caspase3 (Cat. 9664), cleaved-PARP (Cat. 5625), AKT (Cat. 9272), p-AKT (Cat. 9271), PKM2 (Cat. 4053), p-PKM2 (Cat. 3827), AMPK (Cat 2532), p-AMPK (Cat 2535), mTOR (Cat 2972), and p-mTOR (Cat 2974) from Cell Signaling Technology; c-Jun N-terminal kinase (JNK) (Cat. sc6254), cyclin D (Cat. sc397), cdk2 (Cat. sc163), p27 (Cat. sc528), p-FAK (Tyr 397, Cat. sc1688), focal adhesion kinase (FAK) (Cat. sc558), Bcl-2 (Cat. Sc7381), and β-actin (Cat. sc1616) from Santa Cruz Biotechnology, CA, USA; paxillin (BD Biosciences, Cat. BD610619, NJ, USA).
+ Open protocol
+ Expand
5

Comprehensive Protein Analysis of Adipogenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
SDS-PAGE and immunoblot analysis of samples were performed using the following antibodies: custom-made PDGF D (22 (link)), fatty acid synthase (Cell Signaling Technologies [CST]; catalog no.: 3180), C/EBPα (CST; catalog no.: 8178), peroxisome proliferator–activated receptor gamma (CST; catalog no.: 2435), perilipin (CST; catalog no.: 9349), FABP4 (CST; catalog no.: 2120), acetyl CoA carboxylase (CST; catalog no.: 3676), β-actin (CST; catalog no.: 4970), p-AKT (CST; catalog no.: 9275), AKT (CST; catalog no.: 9272), p-JNK (CST; catalog no.: 4668), JNK (CST; catalog no.: 9258), p-ERK1/2 (CST; catalog no.: 9101), ERK1/2 (CST; catalog no.: 9102), p-β-PDGFR Y751 (CST; catalog no.: 3161), p-β-PDGFR Y771 (CST; catalog no.: 3173), β-PDGFR (CST; catalog no.: 3169), vinculin (Sigma; catalog no.: V9131), ubiquitin (CST; catalog no.: 3936), ubiquitin-K48 (Abcam; catalog no.: ab140601), ubiquitin-K63 (Abcam; catalog no.: ab179434), HUWE1 (Abcam; catalog no.: ab70161), and streptavidin–horseradish peroxidase (Abcam; catalog no.: ab7403).
+ Open protocol
+ Expand
6

Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proteins were extracted using total protein extraction kit (CWBio). Proteins were separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to PVDF membrane. Primary antibody directly against PARP, Fas, Fasl, casepaes-3 and GAPDH were from Cell Signaling Technology, Inc. (Danvers, MA, USA). The primary antibodies against p-ERK1/2, p-JNK, p-P38 were puchased from Sigma-Aldrich; Merck KGaA, while p-ERK5, ERK5, ERK1/2, JNK, P38MAPK were from Cell Signaling Technology, Inc. HRP-conjugated secondary antibodies are from CWBio. And the signals were visualized with BeyoECL Plus (EMD Millipore, Billerica, MA, USA).
+ Open protocol
+ Expand
7

Immunoblot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested, and proteins were extracted, separated on an SDS/PAGE gel, transferred onto PVDF membranes and subjected to immunoblot analyses. Blotting was performed using antibodies targeting TOPK (1:500), phosphorylated TOPK (pTOPK, 1:500), c-Jun (1:500), p-c-Jun (Ser63, 1:500), p-c-Jun (Ser73, 1:500), ERK (1:500), pERK (1:500), JNK (1:500), pJNK (1:500), cyclin D1 (1:250), Cdc2 (1:500) and β-actin (1:1000, Sigma-Aldrich, St. Louis, MO).
+ Open protocol
+ Expand
8

Protein Extraction and Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein extracts were obtained by adding the lysis buffer: 25 mM HEPES pH 7.5, 0.3 M NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 0.5 mM DTT, 20 mM β-glicerophosphate, 0.1 mM Na3VO4, 0.1% triton X-100; in the presence of protease inhibitors78 (link). Twenty μg of protein per sample were loaded and resolved using 8%, 10% or 15% SDS-PAGE polyacrylamide gels, and then transferred onto PVDF membranes, followed by immunodetection using appropriate antibodies, purchased from Santa Cruz Technology: Mcl-1 (sc-819), Cell Signaling Technology: BIM, BID, BAX (#9942), p-p38 (1:2000, #4631), p-p53ser15 (#9284), p-ERK1/2 (1:2000, #9106), p-CHK1ser345 and p-CHK2ser19 (#9931), Promega Corporation-Spain: p-JNK (#V7932), or Sigma-Aldrich: α-tubulin (1:10000, #TP026). Unless indicated, all antibodies were diluted 1:1000. Secondary antibodies conjugated with horseradish peroxidase were purchased from BioRad, and chemiluminescence detection was performed using ECL (Santa Cruz Biotechnology).
+ Open protocol
+ Expand
9

Signaling Pathway Inhibitors and Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
U0126 was purchased from VWR International (West Chester, PA), JC-1 from Invitrogen (Grand Island, NY), Sanguinarine from Tocris Biosciences (Minneapolis, MN), and Lapatinib from Selleckchem (Houston, TX). Antibodies for MKP1, ERK, pERK, JNK, pJNK, HER2, and TOM40 were purchased from Sigma (St. Louis, MO); COXIV and pMKP1 were purchased from Cell Signaling (Beverly, MI).
+ Open protocol
+ Expand
10

TGF-β1 and TFA Modulate Epithelial-Mesenchymal Transition

Check if the same lab product or an alternative is used in the 5 most similar protocols
IEC-6 cells were plated into 6-well plates at a density of 3 × 105 cells/mL. When cells reached 60% confluence, 10 ng/mL TGF-β1 and TFA (0, 5, 10 and 15 μg/mL) were added to the plates and incubated for 48 h. Each concentration group was performed in triplicate. Protein lysates were prepared using RIPA lysis buffer. Lysates were then subjected to SDS-polyacrylamide gel electrophoresis and transferred to PVDF membranes. After blocking with non-fat milk, blots were incubated overnight at 4 °C with the indicated antibodies. After incubation for 24 h, membranes were washed and incubated for 2 h at room temperature with corresponding secondary antibodies. For protein detection, membranes were developed with SuperSignal west femto maximum sensitivity substrate (Pierce, Rockford, IL, United States) and the Gel-Pro Analyzer 6.0 software was applied for image analysis. E-cadherin (1:500), ZO-1 (1:500), Vimentin (1:500), N-cadherin (1:500), p-ERK (1:500), ERK (1:500), p-p38 (1:500), p38 (1:500), p-JNK (1:500), JNK (1:500) and GAPDH (1:1000) antibodies were purchased from Sigma-Aldrich, and anti-mouse secondary antibodies were obtained from Proteintech (Chicago, IL, United States).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!