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A1 confocal microscopy

Manufactured by Nikon
Sourced in Japan

The Nikon A1 confocal microscopy system is a high-performance imaging solution designed for advanced scientific applications. It utilizes a laser-based scanning technology to provide high-resolution, three-dimensional imaging of samples. The A1 confocal microscope enables the capture of detailed, optical sections of specimens with exceptional clarity and detail.

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38 protocols using a1 confocal microscopy

1

Quantifying Cell Proliferation Using Fluorescence

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For cell proliferation detection, HEK293T and HeLa cells were plated in 24‐well, and were transfected by the designated plasmids using Lipofectamine® 3000. The cells transfected successfully were marked by GFP. The images taken by Nikon A1 confocal microscopy at 488 nm channel was used to acquire the images at the same position of the 24‐well plate at different time points. ImageJ (https://imagej.nih.gov/ij/download.html) was used to measure the total area of GFP positive cells. The cell proliferation rates were derived by the changes of the area of GFP positive cells over time. The formula is as follows:
Relative Proliferation Rate [fluorescence intensity] = A0/AA: Total area of cells containing fluorescence at definite time after transfection.
A0: Total area of cells containing fluorescence at time 0 was defined for different experiments.
We defined cells post transfection 20 h as time 0.
For MTT assay, cells were incubated in MTT solution at a final concentration of 0.5 mg/ml in DMEM for 4 h at 37°C. DMSO was added to dissolve the formazan crystal. The value of optimal density was measured at 490 nm using a microplate reader (GENios, TECAN).
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2

FRET Microscopy of CD147-Vinculin Interaction

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SMMC-7721 cells were plated into 35 mm culture dishes. Fluorescent images for FRET samples, donor samples, and acceptor samples were captured 16 h after transfection using an A1 confocal microscopy (Nikon, Tokyo, Japan) with 3-FRET filter cubes for EGFP/DsRed: EGFP (488/515 nm), DsRed (543/585 nm), and FRET (488/585 nm) [18] (link). Regions of interest were selected for all non-saturated fluorescent cells in any given field. The background was subtracted from all images before analysis. Donor (pEGFP-CD147) and accepter (DsRed1-N1-vinculin) images were utilized to obtain CoA and CoB data for the next FRET calculation with NIS-Elements software (Nikon, Tokyo, Japan). FRET calibration and net FRET were calculated with analysis software (Nikon, Tokyo, Japan). FRET analysis was performed using a three-filter setup system based on the sensitized emission method. Each experiment was repeated at least three times, and similar results were obtained for each [19] (link).
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3

Immunofluorescence Staining of Cultured Cells

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Cells grown on coverslips were fixed in 4% paraformaldehyde PFA for 20 min and permeablized with 0.5% Triton-X100. After blocking with 2% BSA in PBS for 30min, coverslips were incubated with indicated primary antibodies for 1 h at room temperature in 2% BSA in PBS. Following three times washing with PBS, cells were incubated with Alexa-488-, Alexa-594- or Alex-633-conjugated secondary antibodies for 1 h. Cells were then washed three times with PBS and mounted with VECTASHIELD mounting medium (Vector Laboratories, Burlingame, CA, USA). Images were acquired by Olympus Epifluorescence microscopy, Perkin Elmer Ultraview VoX spinning disc confocal or Nikon A1 confocal microscopy.
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4

Quantifying Junctional Protein Localization

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We quantified the dispersion of LSR or tricellulin from the tTJs to the bTJs in EpH4 and EpH4-Cl3 cells as described previously [15 (link)], with a slight modification. We acquired the fluorescent images of cells using A1 confocal microscopy (Nikon) and measured the fluorescence intensity of LSR and tricellulin at bTJs and tTJs using NIS-Elements software (Nikon).
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5

Fluorescent Microscopy of Embryos

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Embryos for microscopic observation and photography were prepared as previously43 (link) described. Fluorescent images were taken using Nikon A1 confocal microscopy.
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6

Live Imaging of EB3 Comets in CHO Cells

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For live imaging of EB3 comets in CHO cells. Cells growing in a 35 mm MatTek glass bottom petri dish were co-transfected with GFP fusions and EB3-mApple. 20-24 hrs after transfection, the time-lapse movies were captured by Nikon A1 confocal microscopy; frames were captured every 4 s for 4 min. More than five cells were imaged for each transfection and representative movies are shown in this study.
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7

Immunofluorescence Assay Protocol for BHK-21 Cells

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Immunofluorescence assays were performed as previously described [32 (link)]. Briefly, BHK-21 cells grown on coverslips were fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and then blocked with 2% BSA-PBS. Primary and secondary antibodies were sequentially incubated followed by incubation with 4ʹ,6-diamidino-2-phenylindole (DAPI). The cells were examined under a Nikon A1 confocal microscopy.
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8

Immunofluorescent Staining of Smooth Muscle Cells

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Cells were fixed in 4% paraformaldehyde for 10 min at room temperature, washed thrice using PBS, incubated with 0.5% Triton X-100 (Invitrogen) for 15 min, blocked using PBS containing 5% bovine serum albumin for 1 h and incubated with primary antibodies (αSMA (Proteintech 14395-1-AP 1:2000) and SM22 (Proteintech 10493-1-AP 1:2000)) at 4 °C overnight. The next day, cells were washed thrice using PBS and incubated with the Donkey anti-Rabbit IgG antibody (Invitrogen, A31572 for Alexa Fluor 555) for 2 h at room temperature. Finally, cells were DAPI-stained to visualize the nuclei. Stained cells were observed and analyzed by Nikon A1 confocal microscopy.
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9

Ratiometric Imaging of Rho GTPase Activation

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Cells were prepared as previously reported [47 (link)]. Images were obtained using an A1 confocal microscopy (Nikon, Japan). For emission ratio imaging, the filter sets were used as previously reported [48 (link)]. NIS-Elements software (Nikon, Japan) was used to analyze the images following previously described methods [47 (link)]. Briefly, images were dark-current and background-subtracted. Binary masks generated through intensity thresholding were applied to each emission channels, and the matched FRET and donor image sets were ratioed to depict Rac1 or RhoA activation throughout the cell. A linear pseudocolour lookup table was applied.
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10

Immunostaining of HEK 293T Cells

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Cells were seeded in a four-chamber glass bottom dish. HEK 293 T cells were pulsed with 20 µg/mL NY-ESO-1 or control peptide. Cells were fixed by 4% PFA for 15 min at room temperature. After washing, cells were blocked with 5% normal goat serum for 1 hour and incubated with 10 µg/mL mAb 2D2 and APC conjugated antihuman HLA-A2 antibody at 4°C overnight. The next day, cells were washed three times with PBS and incubated with 5 µg/mL Alexa Fluor 488 or 594 conjugated goat-anti-human (H+L) secondary antibody for 1 hour in the dark. Nucleus was stained with DAPI for 5 min. Imaging was acquired with a Nikon A1 confocal microscopy.
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