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11 protocols using poly l lysine 0.01

1

Rat Hepatocyte Culture on Poly-L-Lysine

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Ninety six-well plates were coated with 100 μL Poly-L-Lysine 0.01% (from Sigma Aldrich). After 5 minutes Poly-L-Lysine was removed, wells were rinsed with ultrapure water. Isolated rat hepatocytes were seeded at 80,000 in 200 μL of William’s Medium (Sigma Aldrich) supplemented with 2.2 g/L sodium bicarbonate and incubated overnight at 37°C at 5% CO2.
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2

ER and Plasma Membrane Visualization

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Glass slides were treated with 30 μL of poly-L-Lysine 0.01% (Sigma-Aldrich) and washed 3 times with PBS. HEK293T cells were cultured in the glass slides and transfected as mentioned above. Cells were co-transfected with a plasmid encoding alternatively, an endoplasmatic reticulum marker (ER) (mCh-Sec61β, Addgene 49155) or a plasma membrane (PM) marker (mCh-Mem, Addgene 55779). After 2 days, cells were fixed (4% formaldehyde, Sigma-Aldrich) and DAPI stained (Fluoroshield, Sigma-Aldrich). Images were captured using a FV1000 confocal microscope (Olympus). Mean gray value of each image was measured using ImageJ (NIH).
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3

Visualizing Cytoskeletal Dynamics with Fluorescent Probes

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Plasmids used in this study were RFP-actin, YFP-Rac1L61, and YFP Rac1N17 (from Lemichez’s group, C3M University of Nice Sophia Antipolis, Nice, France); RFP-MLC (from M. Tamada, Memorial Sloan Kettering, New York, NY); mCherry-Arp2, GFP-mDiaN3, and mCherry-Paxilin cDNAs (Addgene); GFP-mDia1 full-length and GFP-mDia2 full-length cDNAs (Addgene); peYFP-α tubulin (Clontech); and GFP-Tallin (from Critchley’s group, University of Leicester, Leicester, UK). Fibronectin was obtained from Roche Applied Science. Poly-l-lysine (0.01%), blebbistatin, latrunculin A, nocodazole, CK666, and wiskostatin were obtained from Sigma-Aldrich. Formin inhibitor SMIFH2 was obtained from Hit2Lead.com. Y27632 dihydrochloride and NSC23766 were obtained from Tocris Bioscience. For experiments with inhibitor, cells were first seeded in a normal media and, after 3 h, inhibitor was added. For washout experiments, the same protocol was followed; after 3 h with inhibitor, the media was switched to a normal one.
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4

Chromate-Induced Transmembrane Potential Imaging

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The HEK293H cell line was obtained from ThermoFisher Scientific Invitrogen (Waltham, MA) and cultured with a DMEM/high glucose medium (GE Healthcare Life sciences, Piscataway) supplemented with fetal bovine serum 10% (ThermoFisher Scientific Gibco, Waltham, MA) in humidified incubator with 5% CO2 at 37 °C. Cells were seeded at a density of 1 × 105 per well. To record the transmembrane potential, cells were placed on a cover glass treated with poly-L-lysine 0.01% (Sigma-Aldrich). For the SICM imaging, cells were seeded on a polydimethylsiloxane (PDMS) substrate in a petri dish with 2 mm of thickness. The PDMS substrate was coated with collagen hydrogel matrix (5 μg/cm2) to improve the cell adhesion.29 (link) If not mentioned otherwise, the HEK293H cells were treated with 10 μM K2CrO4 in extracellular solution for 90 min. For the fixed cell experiments by SICM, two batches of chromate treated cells were fixed with 4% paraformaldehyde for 10 min. Before patch-clamp or SICM experiments, the treated cells were rinsed two times with the extracellular solution.
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5

Neutrophil Cultures for Fungal Analysis

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Neutrophils cultures underwent 2 h of adherence on coverslips treated with Poly-L-Lysine 0, 01% (Sigma-Aldrich) in 24-well bottom plates before fungal challenge or activation with PMA (Sigma Aldrich, 100 ng/ml). Some cultures were treated with DNase (Thermo-Fisher, 100 U/ml) as a negative control. After 2 h of challenge, supernatants were removed, and cultures were fixed with 2.5% of glutaraldehyde for scanning electron microscopy analysis at CME (Electron Microscopy Center – Institute of Bioscience — UNESP— Botucatu). The analyses were performed under a scanning microscope FEI Quanta 200 model from the same lab above.
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6

In Situ Hybridization and PLA

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H1299 cells were plated and fixed as previously described. For experiments using B95-8, 12-mm-diameter coverslips were coated with poly-l-lysine 0.01% (Sigma) for 30 min and air-dried for 5 min in 24-well plates. B-cells were then resuspended in PBS, plated on pre-treated coverslips and incubated for 2 h at room temperature. After a wash with PBS for 5 min, cells were fixed with PBS 4% paraformaldehyde for 20 min and re-washed with PBS for 10 min. Following fixation, both cell lines were processed for in situ hybridization according to the rISH-IF protocol. Samples were then saturated with PBS 3% BSA for 30 min and incubated for 2 h at room temperature with a mix of primary antibody containing the mouse anti-digoxigenin and the rabbit anti-nucleolin previously described. Subsequently, PLA was carried out using the Duolink PLA in situ kit (Sigma), anti-rabbit plus and anti-mouse minus probes (Sigma) following the manufacturer’s protocol.
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7

Determining Live and Dead Cells in V. parahaemolyticus

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To determinate live and dead cells, 500 μL of each V. parahaemolyticus suspension were inoculated with 0.8 μL of LIVE/DEAD® BacLight Kit (Molecular Probes, Eugene, OR, USA) and incubated at room temperature in darkness under agitation for 5–10 min following the manufacturer´s recommendations. An aliquot of 10 μL was placed on a diagnostic slide coated with poly-L-lysine (0.01%) (Sigma), and live and dead cells were counted under an epifluorescence microscope using a double band-filter cube (XF 53, Omega, Brattleboro, USA).
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8

Graphene Sheets Characterization by AFM

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A Bruker Multimode 8 was used in tapping-mode with an J-type scanner, Nanoscope VI controller, Nanoscope v614r1 control software (Veeco, Cambridge, U.K.) and a silicon tapping tip (NSG01, NTI-Europe, Apeldoorn, The Netherlands) of 10 nm curvature radius, mounted on a tapping mode silicon cantilever with a typical resonance frequency 283–374 kHz and a force constant of 12–103 N/m (Bruker OTESPA, U.K.). Images were taken in air, by depositing 40 μL of the sample on a freshly cleaved mica surface (Agar Scientific, Essex, U.K.) coated with poly-L-lysine 0.01% (Sigma-Aldrich, U.K.) and allowed to adsorb for 2 min. Excess unbound material was removed by washing with Milli-Q H2O and then drying in air; this step was repeated once. Size distributions were carried out using ImageJ software to measure the lateral dimension of individual graphene sheets, by counting more than 100 sheets. Sheet thickness was determined from the AFM height profiles.
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9

IEC-6 Cells Interaction with VSL#3

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IEC6 cells were seeded on rounded coverslips coated with poly-l-lysine 0.01% (Sigma-Aldrich) in distilled water. Stocks of 1 g of each VSL#3 formulation (US-made reference version or Italian-made VSL#3) were suspended in 10 ml of PBS (Euroclone, Wetherby, West Yorkshire, UK) and added to IEC-6 cell line cultures at 1,000 bacterial cells/IEC-6 cell at 37°C. After 24 h, coverslips gently washed with PBS were first observed by contrast phase microscopy (Eclipse TS 100, Nikon Corporation, Japan) and then prepared for scanning electron microscopy (SEM) analysis, as described below.
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10

Primary Hippocampal Neuron Culture and Transfection

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Post-natal day 0 C57BL/6 mice were euthanized by decapitation. Hippocampi were dissected from mouse brains and dissociated in Hanks’ Balanced Salt Solution (HBSS) with papaine (Worthington Biochemical Corp. Lakewood, NJ, United States; 9001-73-4; 25 U/ml). Hippocampal neurons were plated on glass coverslips previously coated with Poly-L-Lysine 0.01% (Sigma-Aldrich, St. Louis, MO, United States). Neurons were grown in Neurobasal A medium supplemented with 2% B27, 1% glutamax, and 0.5% penicillin-streptomycin (Life Technologies; 10888022; 35050038; 17504044; 15140122, respectively), and maintained in an incubator with 5% CO2. Hippocampal neurons were transfected at day in vitro (DIV) 7 with the appropriate cDNA (WT-m2R, GFP-m2R, and SEP-m2R) using Lipofectamine 2000 (Life Technologies; 11668019) in OptiMEM medium (Life Technologies; 31985-062). All experiments were performed the day after transfection (DIV8). The m2R is not constitutively expressed by hippocampal neurons in culture.
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