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7 protocols using pfak y925

1

Immunoblotting Analysis of Signaling Pathways

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The immunoprecipitates were resolved on SDS-PAGE and immunoblotted with anti-MUC13 MAb (produced in our lab # clone PPZ020) and anti-HER2 PAb (catalog number A0485; Dako). The proteins were analyzed by immunoblotting with pHER2Y1248 (catalog number 2247), FAK (catalog number 3285 ), pFAK Y925 (catalog number 3284 ), ERK1/2 (catalog number 9102 ), pERK (catalog number 9101 ), pAKTTh308 (catalog number 2965), AKT (catalog number 9272), PAK (catalog number 2602), pPAK1 (catalog number 2605), Integrin-α4 (catalog number 8440), vinculin (catalog number 13901) α-tubulin (catalog number 2144) that were purchased from Cell Signaling 28 (link). The integrin-α5 (catalog number AB1928) was purchased from EMD Millipore. Mouse (catalog number 4021) and rabbit (catalog number 4011) horseradish peroxidase-conjugated secondary antibodies were purchased from Promega.
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2

Western Blot Analysis of Cell Signaling Proteins

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Proteins in cell lysates or concentrated supernatant media (CM) (concentrated by Ultracel-3K centrifugal filter units; EMD Millipore, Billerica, MA, USA) were separated by sodium dodecyl sulphate polyacrylamide gel electrophoresis following standard protocol and transferred to Immobilon polyvinylidene membranes (EMD Millipore). Membranes were blocked with 5% milk in Tris-buffered saline with 0.1% Tween 20 (TBST) for 1 h followed by incubation with primary antibody (diluted in blocking buffer or 2% bovine serum albumin in TBST) overnight. Membranes were then washed three times in TBST and re-incubated with horseradish peroxidase-labelled secondary antibodies for 1 h, washed three times in TBST, and exposed to autoradiography films. Signals were detected by chemiluminescence (Thermo Fisher Scientific). Antibodies for N-cadherin, E-cadherin, pcMET Y1234/Y1235, pEGFR Y1068, pFAK Y925, pSRC Y416, vimentin, Snail, and Twist were from Cell Signaling Technology (Danvers, MA, USA). The antibody against pVEGFR1 (Y1213) was purchased from R&D Systems Inc.. Antibodies for VEGF, vinculin, α-tubulin, Zeb1, and actin were from Santa Cruz Biotechnology (Dallas, TX, USA). All antibodies were used according to manufacturers’ specifications. All cell lysates were prepared in radioimmunoprecipitation assay buffer with protease and phosphatase inhibitors.
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3

Immunoblotting Analysis of Signaling Pathways

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The immunoprecipitates were resolved on SDS-PAGE and immunoblotted with anti-MUC13 MAb (produced in our lab # clone PPZ020) and anti-HER2 PAb (catalog number A0485; Dako). The proteins were analyzed by immunoblotting with pHER2Y1248 (catalog number 2247), FAK (catalog number 3285 ), pFAK Y925 (catalog number 3284 ), ERK1/2 (catalog number 9102 ), pERK (catalog number 9101 ), pAKTTh308 (catalog number 2965), AKT (catalog number 9272), PAK (catalog number 2602), pPAK1 (catalog number 2605), Integrin-α4 (catalog number 8440), vinculin (catalog number 13901) α-tubulin (catalog number 2144) that were purchased from Cell Signaling 28 (link). The integrin-α5 (catalog number AB1928) was purchased from EMD Millipore. Mouse (catalog number 4021) and rabbit (catalog number 4011) horseradish peroxidase-conjugated secondary antibodies were purchased from Promega.
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4

Signaling Pathway Antibody Analysis

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Cell Signaling Technology antibodies used: Wnt5a/b (#2530), Snail (#3879), Slug (#9585), ZEB1 (#3396), LKB1 (#3047), P-ACC S79 (#3661), Total ACC (#4190), Axin2 (#2151), MARK2 (#9118), MARK3 (#9311), AMPKalpha (#2532), P-ULK1 S555 (#5869), Nuak1 (#4458), SIK2 (#6919), GST (#2622), myc-tag (#2272), P-Src family Y416 (#2113), Src (#2109), P-Paxillin Y118 (#2541), Pathscan I for P-ERK1/2 and P-Akt S473 (#5301), Total ERK1/2 (#4695), P-S6K (#9234), HA-tag (#3724), P-MEK1/2 (#9154), P-p90RSK S380 (#11989), P-FAK Y925 (#3284). Epitomics antibodies used: Phospho-FAK Y397 (#2211-1), Phospho-FAK Y576/577 (#2183-1), Total FAK1 (#2146-1), Zyxin (#3586-1). BD Transduction Labs antibodies used: Paxillin (P13520). Sigma antibodies used: Actin (A5441), Flag polyclonal (F7425). Protein Tech antibodies used: MARK1 (21552-1-AP), MARK2 (15492-1-AP). Millipore antibodies used: ZEB2 (ABT332), MARK4 (07-699). Abcam antibodies used Twist (ab50887), IRSp53 (ab15697). CLASP2 antibody was from Santa Cruz Biotechnology (sc-98440). DIXDC1 total antibody was from R&D Systems (AF5599). Phospho-DIXDC1 S592 was developed in collaboration with Antony Wood at Cell Signaling Technologies (CST, Danvers, MA).
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5

Western Blot Analysis of Signaling Pathways

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Cells were lysed with radioimmunoprecipitation buffer (50 mM Tris-HCl pH-7.5, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, and 0.1% SDS) supplemented with protease inhibitor mixture, 2 mM Na3VO4, 10 mM NaF and 1 mM PMSF on ice. Cell lysates were cleared by centrifugation and quantified using the bicinchoninic acid method. Proteins (10-40 μg) were separated by SDS–PAGE under reducing conditions and blotted onto a PVDF membrane (Millipore). Membranes were probed with specific antibodies. Blots were washed and probed with respective secondary peroxidase-conjugated antibodies, and the bands visualized by chemiluminescence. The following antibodies were used: mouse monoclonal antibodies for FLAG-Tag (1:3000, Sigma), β-Actin (1:5000, Sigma), phospho-Tyrosine (1:1000, Cell Signaling), t-FAK (1:200, Santacruz Biotech), rabbit monoclonal antibodies for HA-Tag (1:2000, Cell Signaling), JAK2 (1:1000, Cell Signaling), pJAK2-Y1007/1008 (1:1000, Cell Signaling), pSTAT3-Y705 (1:1000, Cell Signaling), pSTAT5-Y694 (1:1000, Cell Signaling), GAPDH (1:1000, Cell Signaling), SP1 (1:1000, Cell Signaling), pFAK-Y925 (1:1000, Cell Signaling), rabbit polyclonal antibodies for Histone H3 (1:1000, Abcam).
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6

Cell Lysis and Focal Adhesion Kinase Analysis

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For cell lysis, IEC monolayers were harvested in RIPA buffer as described previously (4 (link)). The following antibodies were used: FAK (catalog 610088) BD Biosciences; p-FAK (Y861) (catalog PS 1008) Calbiochem; p-FAK (Y397) (catalog 3283) and p-FAK (Y925) (catalog 3284); and Src (catalog 2108) and p-Src (y416) (catalog 2101) Cell Signaling Technology.
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7

Protein Extraction and Western Blot Analysis

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Cells were lysed in RIPA buffer [137 mM NaCl, 20 mM Tris-HCl (pH 7.4), 10% glycerol, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 2 mM EDTA protease inhibitor cocktail (Millipore, 539137), phosphatase inhibitor cocktail (Sigma-Aldrich, P0044 and P5726)] for 20 minutes on ice. After short sonication, cell lysates were centrifuged, and the supernatants were collected. Proteins were resolved on 10% SDS-polyacrylamide gels and transferred onto nitrocellulose membranes (Bio-Rad). The membrane was blocked with 5% milk powder (Lab Scientific) in 1× TBS containing 1% Tween-20 (TBST) for 1 hour, washed with TBST, and incubated with the specific antibodies overnight. Antibodies to FGFR1 (Cat# 9740), FGFR2 (Cat# 11835), Src (Cat# 2108), p-Src (Y416) (Cat# 2101), FAK (Cat# 3285), p-FAK (Y925) (Cat# 3284), GAPDH (Cat# 5174), and Caveolin-1 (Cat# 3238) were from Cell Signaling Technology. The antibody to ERK2 (Cat# sc-154) was from Santa Cruz Biotechnology. The antibody to phosphotyrosine (pY) was form Millipore (clone 4G10, Cat#05-321), and the γ-tubulin antibody (Cat# T6557) was from Sigma-Aldrich.
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