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6 protocols using clarity western ecl substrate 170 5061

1

Western Blot Analysis of MRC1 and HIV-1 Gag

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Cells were washed once with PBS, suspended in PBS (100 μL/106 cells), and mixed with an equal volume of 2× sample buffer. Samples were heated at 95°C with occasional vortexing until samples were completely dissolved. Samples were subjected to SDS-PAGE, transferred to polyvinylidene difluoride (PVDF) membranes, and reacted with primary antibodies as described in the text. Human MRC1 was identified using a rabbit monoclonal antibody to hMRC1 (clone ab125028; Abcam, Cambridge, MA, USA). HIV-1 Gag was identified using pooled HIV immunoglobulin (Ig; NIH Research and Reference Reagent Program; Cat no. 3957), and tubulin was identified using a mouse monoclonal antibody to alpha-tubulin (T9026; Sigma-Aldrich, St. Louis, MO, USA). Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (GE Healthcare, Piscataway, NJ, USA), and proteins were visualized by enhanced chemiluminescence (Clarity Western ECL substrate 170-5061; Bio-Rad Laboratories, Hercules, CA, USA).
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2

Western Blot Protein Analysis Protocol

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Seventy µg of total proteins were loaded and run onto 10% Sodium Dodecyl Sulphate - PolyAcrylamide Gel Electrophoresis (SDS-PAGE) and transferred to PVDF (Bio-Rad, Hercules, California, CA, USA) membranes. Membranes were blocked in TBS (Tris-HCl pH 7.4, 150 mM NaCl) plus 5% BSA for 1 h at room temperature (RT) and then decorated with appropriate antibodies (Sprouty1 sc-365520, Tubulin sc-23948, and phospho-Akt1/2/3 (Thr308) sc-16646, Santa Cruz Biotechnology; TATA Binding protein (TBP) MA1-189 and Vinculin MA5-11690, Sigma-Aldrich; Foxo3a #2497, p44/42 MAPK (ERK1/2) #4696s, phospho-p44/42 MAPK (T202/Y204) #4377s and Akt (pan) (C67E7) #4691s, Cell Signaling) in PBS-Tween 0.2% overnight at 4 °C. Membranes were then washed with PBS-Tween 0.2% three times for 15 min each, incubated with appropriate peroxidase-linked secondary antibody (Santa Cruz Biotechnology) for 1 h at RT and washed again in PBS-Tween 0.2%. Specific binding was detected using an enhanced chemiluminescence system (Clarity Western ECL Substrate #170-5061, Bio-Rad).
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3

Western Blot Analysis of Protein Expression

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Protein concentration was determined using the Bio-Rad DC Protein Assay (Bio-Rad). 100 µg of total protein were loaded and run onto 4–14% precast gradient gel (Criterion TM TGX Stain-Free TM) electrophoresis and transferred to PVDF (Bio-Rad, Hercules, California, CA, USA) membranes by using the protocol described elsewhere [22 (link)]. Blots were blocked in TBS (Tris-HCl pH7.6, 150 mM NaCl) plus 5% nonfat milk for 1 h at room temperature (RT) and then decorated with appropriate antibodies (HERC1 A301-904A, Bethyl Laboratories, Inc., Montgomery, TX, USA, Tubulin sc-23948, and p44/42 MAPK (ERK1/2) #4696s, phospho-p44/42 MAPK (T202/Y204) #4377s; Vinculin MA5-11690, Sigma-Aldrich; BCR Cell Signaling Tech, phospho-Tyr, sc-7020, Santa Cruz Biotechnology, Dallas, TX, USA; in PBS-Tween 0.5% overnight at 4 °C. Membranes were then washed with PBS-Tween 0.5% 3 times for 15 min each, incubated with appropriate peroxidase-linked secondary antibody (Santa Cruz Biotechnology) for 1 h at RT, and washed again in PBS-Tween 0.5%. Specific binding was detected using an enhanced chemiluminescence system (Clarity Western ECLSubstrate #170-5061, Bio-Rad, Hercules, CA, USA).
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4

Western Blot Analysis of Protein Samples

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One hundred micrograms (100 µg) of total protein were loaded and run onto 4%–14% gradient precasted gel (CriterionTM TGX Stain-FreeTM, Bio-Rad, Hercules, CA, USA) electrophoresis and transferred to PVDF (Bio-Rad, Hercules, CA, USA) membranes as described elsewhere [42 (link)]. Blots were blocked in TBS plus 5% non-fatty acid milk and decorated with appropriate primary antibodies (HERC1 #A301-904A, Bethyl Laboratories Inc., Montgomery, TX, USA; β-Actin, sc-47778, phospho-Tyr, sc-7020, c-Abl, sc-23 and BCR, sc-20707, Santa Cruz Biotechnology, Dallas, Texas, USA; Vinculin MA5-11690, Invitrogen, Carlsbad, CA, USA). Membranes were then washed and incubated with appropriate peroxidase-linked secondary antibody (Santa Cruz Biotechnology, Dallas, TX, USA). Specific binding was detected using an enhanced chemiluminescence system (Clarity Western ECL Substrate #170-5061, Bio-Rad, Hercules, CA, USA).
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5

Western Blot Analysis of MRC1 and HIV-1 Gag

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Cells were washed once with PBS, suspended in PBS (100 μL/106 cells), and mixed with an equal volume of 2× sample buffer. Samples were heated at 95°C with occasional vortexing until samples were completely dissolved. Samples were subjected to SDS-PAGE, transferred to polyvinylidene difluoride (PVDF) membranes, and reacted with primary antibodies as described in the text. Human MRC1 was identified using a rabbit monoclonal antibody to hMRC1 (clone ab125028; Abcam, Cambridge, MA, USA). HIV-1 Gag was identified using pooled HIV immunoglobulin (Ig; NIH Research and Reference Reagent Program; Cat no. 3957), and tubulin was identified using a mouse monoclonal antibody to alpha-tubulin (T9026; Sigma-Aldrich, St. Louis, MO, USA). Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (GE Healthcare, Piscataway, NJ, USA), and proteins were visualized by enhanced chemiluminescence (Clarity Western ECL substrate 170-5061; Bio-Rad Laboratories, Hercules, CA, USA).
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6

Comprehensive Reagents and Antibody Protocol

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Reagents and antibodies were purchased from the following suppliers: HRP–conjugated goat anti-mouse IgG (31430) and goat anti-rabbit IgG (31461); Alex Fluor 488 goat anti-mouse IgG (A11029), Texas Red goat anti-mouse IgG (T-862), and goat anti-rabbit IgG (T-2767); and Alexa Fluor Plus 647 goat anti-mouse IgG (A32728) and goat anti-rabbit IgG (A32733) are from Thermo Fisher Scientific. Anti-beclin-1 (NB500-249), anti-FAM134B (NBP2-55248), and anti-Sec62 (NBP1-84045) are from Novus Biologicals. Anti-calnexin (C4731), anti-HA (H9658), anti-LC3B (L7543), anti-Myc (C3956), and anti-tubulin (T-9026) are from Sigma-Aldrich. Anti-ERGIC53 (ALX-804-602) is from Enzo Life Sciences. Anti-GABARAP+L1+L2 (ab109364) and anti-GM130 (ab52649) are from Abcam. Anti-LAMP2 (555803) and anti-Sec31A (612351) are from BD Pharmingen. Anti-p62 (H00008878-M0162) is from Abnova. Anti-VMP1 (12978s) is from Cell Signaling. DC Protein Assay (500-0119) and Clarity Western ECL Substrate (170-5061) are from Bio-Rad. Effectene Transfection Reagent (301427) is from Qiagen. Lipofectamine RNAiMAX Reagent (100014472) is from Thermo Fisher Scientific. MTS cross-linking reagents M3M (1,3-propanediyl bis-MTS) and M8M (1,5-pentanediyl bis-MTS) are from Toronto Research Chemicals. ProLong Diamond antifade mountant without (P36970) or with DAPI (P36971) is from Thermo Fisher Scientific.
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