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5 protocols using olaparib

1

Investigating SIRT6 in Osteosarcoma Cell Lines

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This study used two human osteosarcoma cell lines, U2OS (Korean Cell Line Bank, Seoul, Korea) and KHOS/NP. KHOS/NP cells were kindly provided by Chang-Bae Kong (Department of Orthopedic Surgery, Korea Institute of Radiological and Medical Science). The cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco BRL, Gaithersburg, MD) containing 10% FBS (Gibco BRL) and 1% penicillin/streptomycin (100 U/mL) at 37 °C in a humidified incubator under 5% CO2. This study used doxorubicin (D1515, Sigma, St. Louis, MO), KU-55,933, an ATM inhibitor, (SML1109, Sigma), and olaparib, a PARP inhibitor (SC-302,017, Santa Cruz Biotechnology, Santa Cruz, CA). The vector for SIRT6-specific shRNA was purchased from GenePharma Co. (GenePharma, Shanghai, China). The SIRT6 duplex had the sense and antisense sequences 5′-CACCGCTACGTTGACGAGGTCATGATTCAAGAGATCATGACCTCGTCAACGTAGCTTTTTTG-3′ and 5′-GATCCAAAAAAGCTACGTTGACGAGGTCATGATCTCTTGAATCATGACCTCGTCAACGTAGC-3′, respectively [16 (link)]. A pFLAG-CMV-2 plasmid vector was used as a control vector. The vector overexpressing wild-type SIRT6 (pFLAG2_SIRT6) was synthesized by Cosmogenetech Co. Ltd. (Cosmogenetech Co. Ltd, Seoul, Korea) [16 (link)]. Transfection was performed using Lipofectamine 3000 (Invitrogen, Carlsbad, CA).
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2

Monoclonal Anti-MGMT Antibody Protocol

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Monoclonal anti-MGMT antibodies were obtained from LTK BioLaboratories (Taoyuan, Taiwan). Chemical agents including O6-benzylguanine (O6BG) and olaparib and antibodies targeting BRCA1, pBRCA1 (Ser988), BRCA2, RAD51, β-actin, and lamin A/C were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Monoclonal anti-γ-H2AX antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Other experimental reagents used are listed in a previous report [18 (link)].
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3

Reconstitution and storage of agents

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AQ4N (Sigma) and KP167 were reconstituted in distilled water to a stock concentration of 10 mM. Olaparib (Santa Cruz Biotechnology) and KU‐55933 (Tocris Biosciences) were reconstituted in DMSO to a stock concentration of 10 mM. All stock solutions were aliquoted and stored at −20°C for a maximum of 3 months and repeat freeze thaw cycles avoided. A new batch of drugs was always tested for similar response between new and old to ensure consistency and to minimize batch–batch variability.
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4

Osteosarcoma Cell Line Cultivation and Manipulation

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The human osteosarcoma cell lines, U2OS, SaOS2, and MG63 were purchased from the Korean Cell Line Bank (KCLB, Seoul, Korea). KHOS/NP cells were kindly provided by Chang-Bae Kong (Department of Orthopedic Surgery, Korea Institute of Radiological and Medical Science) [27 (link)]. The cells were cultured in DMEM media containing 10% FBS (Gibco BRL, Gaithersburg, MD), and 10% penicillin/streptomycin (100 U/mL) at 37 °C in a humidified 5% CO2 incubator. The PARP inhibitor, olaparib, was purchased from Santa Cruz Biotechnology (sc-302017, Santa Cruz Biotechnology, Santa Cruz, CA) and doxorubicin was obtained from Sigma (D1515, Sigma, St. Louis, MO). Short interfering RNA (siRNA) for PARP1 and negative control siRNA duplexes were purchased from Santa Cruz biotechnology (Santa Cruz Biotechnology, Santa Cruz, CA). The cells were transfected using Lipofectamine® RNAiMax (Invitrogen, Life technologies, Carlsbad, CA).
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5

Clonogenic Assay for DNA Damage Response

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HeLa cells were transfected with indicated siRNAs, and 48 h after transfection, cells were counted and seeded in triplicates in six-well plates (500 cells per well). The day after, cells were treated with indicated concentration of the following drugs: phleomycin (Sigma-Aldrich; 1-h treatment), camptothecin (C9911; Euromedex; 1-h treatment), MMC (Sigma-Aldrich; EMD Millipore; 16-h treatment), Olaparib (SC-302017; Santa Cruz Biotechnology), and NCS (N9162; Sigma-Aldrich; 15-min treatment). For phleomycin, camptothecin, and MMC, medium was refreshed and cells were then cultured for 10 d. Treatment with Olaparib was maintained for the whole experiment. Colonies were stained with 0.1% crystal violet and counted using Fiji (ImageJ; National Institutes of Health).
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