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10 protocols using anti igm apc

1

Comprehensive Immunological Profiling Protocol

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Serum immunoglobulins (Ig) levels (IgG, IgA and IgM) were measured by immunoturbidimetry using the automatic analyzer Alinity c system (Abbott Laboratories, Chicago, IL, USA). For cellular evaluation, EDTA whole blood samples were collected. Lymphocyte subpopulations (CD4+ T, CD8+ T, B and NK cells) were performed using BD Trucount tubes and the BD Multitest 6 Color BTNK kit (BD Biosciences, San Diego, CA, USA), which included the following mixtures of fluorophore-conjugated monoclonal antibodies (mAb): anti-CD45-PerCP-Cy5.5, anti-CD3-FITC, anti-CD8-APC-Cy7, anti-CD4-PE-Cy7, anti-CD19-APC, and anti-CD16+CD56-PE. B cell phenotype was performed with an eight-color panel of the following mAb: anti-CD45-APC-H7, anti-CD19-V500, anti-CD10-V450, anti-CD38-PE-Cy7, anti-CD21-PE, anti-CD27-PerCP-Cy5, anti-IgD-FITC, and anti-IgM-APC (BD Biosciences, San Diego, CA, USA), following EURO-Class classification. Cells were acquired on a BD FACSCanto II Flow Cytometer (BD Biosciences, San Diego, CA, USA), and the InfinicytTM22.0 software was employed for multiparametric analysis (Cytognos SL, Salamanca, Spain).
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2

Bone Marrow B Cell Subset Analysis

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Single cell suspensions were prepared from femurs of 8 week old mice as previously described (7 ). Cells were washed, stained, and analyzed on an LSRII (BD Biosciences) using the following labeled antibodies: anti-B220 (PB), anti-CD19 (APC-Cy7), anti-CD43 (Biotin), anti-BP-1 (PE), and anti-IgM (APC) from BD Pharmingen; anti-AA4.1 (PE-Cy7) from eBioscience; and anti-IgD (Biotin) from Southern Biotech. Propidium Iodide (PI) was used to identify dead cells. The scheme of Hardy (2 (link)) was used to identify different B cell subsets in the BM. Fractions C and C’ were distinguished based on cell size.
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3

Detailed PBMC Phenotyping Protocol

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Peripheral blood mononuclear cells (PBMCs), separated by density gradient centrifugation with Lymphocyte Separation Medium (Life Technology), were resuspended with RPMI medium supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 µg/mL streptomycin at 1 × 106 cells/mL, and then incubated with various combinations of monoclonal antibodies and isotype controls. The following antibodies were used to identify different B cell subsets: anti-CD19-PerCP, anti-CD27-FITC, anti-IgD-BV510, anti-CD38-PE (all from Biolegend, San Diego, CA, USA), and anti-IgM-APC (BD Bioscience, San Diego, CA, USA) (Supplementary Figure S1 and Table S1).
The cells were acquired using FACSCelesta (Beckton-Dickinson, San Jose, CA, USA) and analyzed using FlowJo software. Isotype control antibodies and single-stained samples were used to periodically check the settings and gates on the flow cytometer. After the acquisition of 100,000 to 200,000 events, lymphocytes were gated based on forward and side scatter properties after the exclusion of dead cells and doublets.
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4

Isolation and Culture of Naïve B Cells

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After PBMC isolation, B cells were enriched by positive selection using magnetic columns according to the manufacturer’s instructions (EasySepTM, StemCell Technology, Vancouver, BC, Canada). The cells were stained with anti-CD19-PerCP-Cy5.5, anti-CD27-PE, anti-IgM-APC, and anti-IgD-FITC (all antibodies from BD Biosciences, San Diego, CA, USA). The B cells, defined as CD19+CD27IgD+IgM, were sorted with FACSAria II cell sorter (Beckton-Dickinson, San Jose, CA, USA). After sorting, the cells were labeled with 5 µM of CFSE dye (Invitrogen, Eugene, OR, USA) before the culture, according to manufacturer’s instructions. The cells were cultured in AIM-V serum-free medium in the presence of CpG-ODN2006 (InvivoGen, San Diego, CA, USA) (2.5 µg/mL) and anti-CD40 (BD Bioscience, San Diego, CA, USA) (2 µg/mL) in a 96-well U bottom plate at 37 °C in a humidified 5% CO2 incubator. On day 5, the cells were harvested and acquired using FACSCelesta (Beckton-Dickinson, San Jose, CA, USA).
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5

Cytotoxicity Assays for Cell Lines and Primary Material

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Killing of cell lines was tested in standard 51chromium release assays as described previously [9 (link)]. Killing of primary material was analyzed in FACS-based cytotoxicity assays. 50,000 target cells were co-cultured with T cells in effector/target (E/T) ratio 3:1 overnight. After overnight culture cells were stained with specific antibody panels and SYTOX Blue Dead Cell Stain (Invitrogen by Thermo Fisher Scientific) was added prior to acquisition to identify living cells. Samples were acquired by FACS using fixed flow rates and stable acquisition was validated using Flow-Count Fluorospheres (Beckman Coulter). Co-cultures with activated B cells were stained using anti-CD3 (Alexa Fluor 700, BD Pharmingen), anti-CD19 (PE-Cy7, BD Pharmingen), anti-IgA (PE, Miltenyi), anti-IgG (FITC, DAKO) and anti-IgM (APC, BD). For primary MM, 50,000 patient-derived BM mononuclear cells were used as target cells. Co-cultures were stained with anti-CD3, anti-CD19 (APC, BD Pharmingen), anti-CD45 (FITC, BD), anti-CD38 (PE-Texas Red, Invitrogen), and anti-CD56 (PE-Cy7, BD Pharmingen). MM cells were defined as CD3neg, CD19neg, CD45neg−int, CD38pos, CD56pos.
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6

Isolation and Characterization of Murine Immune Cell Subsets

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Single-cell suspensions were prepared from spleen, bone marrow and thymus of 6-14 week old mice. Single-cell suspensions were stained with antibodies and analyzed using FACS Calibur with CellQuest software (BD Bioscence, San Diego, CA) or FlowJo software (Tree Star, Ashland, OR) (15 (link)). B220+CD43-IgM- small pre-B cells and CD4+CD8+ double-positive T cells were sorted by a MoFlo flow cytometer. Splenic B cells were purified using B cell isolation kits with MACS cell separation columns (Miltenyi Biotec, San Diego, CA). Generally we pooled bone marrow or splenic cells from 2-3 animals of the same genetic background for cell fractionation. Antibodies used are as follows: anti-mouse-Igκ-PE (BD Bioscience); anti-mouse-Igλ1,2,3-FITC (BD Bioscience); anti-human-Igκ-FITC (Southern Biotech, Birmingham, AL); anti-B220-PerCP-Cy5.5, anti-IgM-APC, anti-CD43-PE, anti-B220-FITC, anti–CD21-FITC, anti–CD23-APC, anti–CD4-FITC, anti–CD8a-PE, anti-B220-biotin (all from BD Bioscience); Streptavidin-APC (Southern Biotech).
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7

Multiparametric Flow Cytometry of Immune Cells

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The distribution of the different leukocyte subsets was characterized by multiparametric flow cytometry 0–10 days before the first vaccine dose, following the Guidelines for the use of flow cytometry and cell sorting in immunological studies. To this end, 200 µl of whole fresh blood were stained with anti-CD45 Pacific Orange, anti-CD3 APC, anti-CD4 FITC, anti-CD8 APC H7, anti-CD19 PerCP, anti-CD27 PE, anti IgD FITC and anti-IgM APC (BD Becton Dickinson). Lymphocyte populations were identified as follows: CD4+ lymphocytes: CD45+ CD3+, CD4+, CD8-; naïve B cells: CD45+ CD3- CD19+ CD27- IgM+ IgD+. Absolute cell numbers were calculated from white blood cell counts obtained with an XN-10 Hematology System (Sysmex, Kobe, Japan- Roche, Basel, Switzerland).
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8

Murine Bone Marrow Immunophenotyping

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Femora and tibiae were isolated from 6 month old mice and flushed with Hanks’ Balanced Salt Solution containing 1% FBS. The marrow cell suspension was then stained and analyzed by flow cytometry. The following antibodies were used: anti-CD43-PE (BD Pharmingen, San Jose, CA), anti-c-Kit-APCCy7 (BD Pharmingen), anti-Sca-1-FITC (BD Pharmingen), anti-B220-FITC (BD Pharmingen), anti-IL-7rα PECy7 (eBioscience, San Diego, CA, USA), anti-CD19-APCCy7 (BD Pharmingen), anti-IgM-APC (BD Pharmingen), anti-CD34-APC (BD Pharmingen). To analyze Lin cells, total bone marrow cells were stained with a biotinylated Lin+ antibody cocktail of anti-CD4, anti-CD8, anti-NK1.1, anti-CD3, anti-CD11c, anti-B220, anti-CD19, anti-Gr1, anti-CD11b and anti-Ter119 (BD Pharmingen), followed by streptavidin-Pacific Blue (BD Pharmingen). FACS analyses were performed on a FACS Canto II running with the FACSDiva software (Becton Dickinson, Franklin Lakes, NJ, USA). In all analyses, propidium iodide was used to exclude dead cells. FACS analysis was done using the FlowJo (Treestar Inc., Ashland, OR, USA) software.
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9

Flow Cytometric Analysis of B Cell Subsets

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B cell subsets were identified with following anti-human antibodies: CD19 PE Cy5.5, anti-IgM APC, CD27 FITC, anti-IgD PerCP Cy7, CD21 PerCP Cy7, FCμR PE (clone HM14), mouse IgG1κPE (isotype), CD20 PE and CD43 APC, all from BD Pharmingen (San Jose, California). TLR2 (Pam3CSK4), CpG (ODN 2006) were purchased from InvivoGen (San Diego, California). In Initial experiments, HM14 mAb monoclonal antibody against FcμR [7 (link)] provided by Kubagawa was used. Thereafter, commercial antibodies (same clone) were used.
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10

Comprehensive B-cell Immunophenotyping

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B-cell subsets were analyzed on whole blood by incubating various combinations of monoclonal antibodies, including anti-human CD19 PerCP, anti-IgM APC, CD27 FITC, CD38 FITC, anti-IgD PE, CD21 PE, CD70 PE, CD27 APC, CD24 FITC, CD38 PE, CD183 PE (BD Pharmingen) and CD43 APC (Biolegend, San Diego, CA, USA) monoclonal antibodies, and corresponding isotypes. After staining, blood was lysed by 1 × lysing solution (BD Pharmingen) and washed with phosphate-buffered saline and analyzed. Flow cytometry was performed using FACSCalibur (Becton-Dickenson, San Jose, CA, USA) equipped with argon ion laser emitting at 488 nm (for FITC, PE and APC excitation). Forward and side scatters were used to gate and exclude cellular debris. Ten thousand cells were acquired and analyzed using the Flowjo software (Tree star Inc., Ashland, OR, USA).
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