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2 protocols using pa1 901

1

Western Blot Analysis of DRG Neuron Proteins

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DRG neurons transduced with Sarm1, IP3R1, or control shRNA for 6–7 d were lysed with nonionic detergent. Lysates were separated by 3–8% Tris-Acetate SDS-PAGE for IP3R1 and by 4–12% Bis-Tris SDS-Page for Sarm1 (Thermo Fisher Scientific) and probed with mouse anti-Sarm1 (1:10,000; Chen et al., 2011 (link)), rabbit anti-IP3R1 (1:1,000; Thermo Fisher Scientific; PA1-901), and rabbit anti–pan-actin (1:1,000; Cell Signaling; 8456S). Bands were visualized with secondary antibodies conjugated to HRP (1:10,000; Bio-Rad; 1721019, 1706516) and SuperSignal chemiluminescent substrates signal (Thermo Fisher Scientific). Blots were imaged using the AI600 Chemiluminescent Imager (GE Healthcare).
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2

Visualizing Protein-Protein Interactions

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Protein-protein interactions were visualized using Duolink In Situ detection kit (DUO92002/4/7; Sigma-Aldrich) by following the manufacturer’s protocol. Briefly, cells were cultured on 12 mm glass coverslips in 24 well plates. At the end of the experiment, cells were washed with PBS, fixed with 4% paraformaldehyde, and permeabilized (0.2% Triton X, 0.1 M glycine in PBS). Next, the cells were incubated with blocking solution, followed by overnight incubation with primary antibodies. The cells were then washed, probed with the secondary antibodies conjugated with oligonucleotide, ligated, and amplified. Preparations are then mounted using Duolink II mounting medium containing DAPI (DUO82040; Sigma-Aldrich), and the fluorescence signals were analyzed by ImageXpress Micro confocal and MetaXpress software (Molecular devices). Primary antibodies used in in situ PLA experiments were anti-rabbit VDAC1 (Abcam, ab15895; 1:100 dilution), anti-mouse monoclonal IP3R1 (Santa Cruz; sc-271197; Clone E8; 1:50 dilution), anti-mouse monoclonal GRP75 (Santa Cruz, sc133137; Clone D9; 1:50 dilution), anti-rabbit IP3R1 (Invitrogen, PA1-901; 1:100 dilution), anti-rabbit FLAG (Cell signaling, #2368; 1:100 dilution) and anti-mouse HA (Santa Cruz, sc7392; Clone F-7; 1:50 dilution).
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