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4 protocols using irdye 800cw or 680rd labelled secondary antibodies

1

Western Blot Protein Detection

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All gels were transferred onto nitrocellulose membranes using the iBlot Gel Transfer Device (Invitrogen) set at P3 (20 V) and 8 min. Membranes were blocked using 1x Phosphate buffered saline (PBS, Fisher Bioreagents) containing with 5% (w/v) milk powder (Marvel) and 0.05% (v/v) Tween20 (Sigma). The membranes were incubated overnight at 4°C in blocking buffer containing the desired primary antibodies. Blots were washed 3x15 min with 1xPBS buffer with 0.05% v/v Tween20 and where required probed with IRDye 800CW or 680RD labelled secondary antibodies (Li-COR) at 1/10,000 dilution for 2 h at room-temperature. Blots were washed 3x15 min with 1xPBS buffer with 0.05% v/v Tween20 and scanned by direct fluorescence monitoring using Odyssey CLX Infrared Imaging System (Li-COR). The primary antibodies used in this study are as listed in Supplementary Table 3.
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2

Western Blot Protein Detection

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All gels were transferred onto nitrocellulose membranes using the iBlot Gel Transfer Device (Invitrogen) set at P3 (20 V) and 8 min. Membranes were blocked using 1x Phosphate buffered saline (PBS, Fisher Bioreagents) containing with 5% (w/v) milk powder (Marvel) and 0.05% (v/v) Tween20 (Sigma). The membranes were incubated overnight at 4°C in blocking buffer containing the desired primary antibodies. Blots were washed 3x15 min with 1xPBS buffer with 0.05% v/v Tween20 and where required probed with IRDye 800CW or 680RD labelled secondary antibodies (Li-COR) at 1/10,000 dilution for 2 h at room-temperature. Blots were washed 3x15 min with 1xPBS buffer with 0.05% v/v Tween20 and scanned by direct fluorescence monitoring using Odyssey CLX Infrared Imaging System (Li-COR). The primary antibodies used in this study are as listed in Supplementary Table 3.
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3

Western Blot Analysis of HP1 Proteins

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Whole‐cell lysates were prepared from HeLa cells transfected either with the indicated siRNAs or the indicated plasmids 24 h before harvesting. Membranes were incubated with primary antibodies recognising HP1α (15.19s2 05‐689; 1:750; Merck Millipore; Fig 1D), GAPDH (ab9485; 1:2,500; Abcam; Fig 1D), α‐tubulin (B512; 1:3,000; Sigma‐Aldrich), Mad2 (A300‐301A; 1:5,000; Bethyl), GFP (A‐11122; 1:1,500; Thermo Fisher Scientific), HP1α (2616; 1:1,000; CST; Fig EV5A), HP1β (8876; 1:1,000; CST; Fig EV5A), HP1γ (MAB3450; 1:1,000; Millipore; Fig EV5A), GAPDH (016‐25523; 1:10,000; Wako; Fig EV5A) and subsequently with IRDye 680rd or 800cw labelled secondary antibodies (LI‐COR Biosciences) or HRP‐linked secondary antibodies (GE Healthcare; Fig 1D). Fluorescence intensities were determined using the imaging systems Odyssey or Odyssey CLx (Fig EV5A; LI‐COR Biosciences). HRP activity was determined after incubation with ECL substrate (Thermo Fisher Scientific) using the ChemiDoc MP imaging system (BioRad; Fig 1D).
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4

Temporal Cortex Protein Expression Analysis

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Temporal cortices were lysed in RIPA buffer and spun, and the supernatants were quantified via BCA assay, and five μg of protein per temporal cortex lysate was resolved by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membranes (PVDF) for Western blotting. Membranes were blocked for 1h in Intercept (TBS) Protein-Free Blocking Buffer (LI-COR Bioscience, Lincoln, NE, USA) followed by incubation with anti-PSD95 (1:000, ab 238135; Abcam, Cambridge, MA, USA) and synaptophysin (1:000, ab52636; Abcam, Cambridge, MA, USA) antibodies overnight at 4 °C. Near-infrared-labeled secondary antibodies were used to detect antibody binding using IRDye®, 680RD-, or 800CW-labelled secondary antibodies 1:15,000 (LI-COR Bioscience, Lincoln, NE, USA). Blots were scanned using a LI-COR Odyssey imaging system (LI-COR Bioscience, Lincoln, NE, USA). Band intensity values were normalized to their respective loading control, glyceraldehyde-3-phospate dehydrogenase (GAPDH) (sc32233; Santa Cruz Biotechnology, Santa Cruz, CA, USA). Band intensities were quantified using ImageJ software. A band size was selected that fit the entirety of each band on the blot. The software was used to measure band intensity in each lane, which was normalized to its relevant loading control, GAPDH values, from the same membrane.
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