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Lentiviral system

Manufactured by Merck Group
Sourced in China

The Lentiviral system is a laboratory tool used for gene delivery and expression. It consists of a viral vector capable of introducing genetic material into target cells, including non-dividing and hard-to-transfect cells. The system enables efficient and stable transduction of a wide range of cell types.

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5 protocols using lentiviral system

1

Lentiviral shRNA and siRNA Silencing Protocol

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Gene silencing was performed using specific shRNAs delivered by a lentiviral system acquired from Sigma‐Aldrich (Shanghai, China), following the instructions provided. Briefly, to yield lentiviruses containing specific shRNA sequences, 293T cells were cotransfected with 2.5 μg pMD2.G and 7.5 μg psPAX2 packaging plasmids and 10 μg of the pLKO.1 plasmid containing the specific shRNA for 24 hours. The lentivirus containing cultured medium was collected and stored at −80℃ as aliquots until further use. To deliver the specific shRNA construct, approximately 10% confluent cells were incubated with the lentivirus bearing specific shRNA in growth medium containing 8 mg/mL polybrene at 37℃ for 24 hours. The transduced cells were then selected with 2 mg/mL puromycin. For small interfering RNA assay, cells were cultured for 16 hours in 6‐well plates before transfection. The siRNA oligonucleotides were as follows:
si‐Aur‐A‐1:5′‐AUGCCCUGUCUUACUGUCA‐3′;
si‐Aur‐A‐2:5′‐GGCAACCAGTGTACCTCAT‐3′;
si‐Aur‐A‐3:5′‐ATTCTTCCCAGCGCGTTCC‐3′;
si‐FOXM1‐1:5′‐GCACTATCAACAATAGCCTAT‐3′;
si‐FOXM1‐2:5′‐GCCAATCGTTCTCTGACAGAA‐3′;
si‐FOXM1‐3:5′‐GGACCACUUUCCCUACUUU‐3′;
control: 5′‐UUCUCCGAACGUGUCACGU‐3′.
siRNA was transfected into cells using Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions. To confirm down‐regulation efficacy, targeted genes were detected by Western blot.
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2

Lentiviral shRNA Knockdown Approach

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Knockdown of genes was performed with specific shRNAs delivered using a lentiviral system purchased from Sigma-Aldrich Corp. according to the instructions provided by the manufacturer. In brief, to generate the lentivirus containing the specific shRNA, 293T cells were cotransfected with 2.5 mg pMD2.G and 7.5 mg psPAX2 compatible packaging plasmids and 10 mg of pLKO.1 plasmid bearing the specific shRNA for 24 hours. Culture medium containing the generated lentiviruses was collected and stored at –80°C as aliquots for further use. To deliver the specific shRNA construct, approximately 10% confluent cells were infected with lentiviruses bearing the specific shRNA in growth medium containing 8 mg/ml Polybrene and were incubated at 37°C for 24 hours. Transfected cells were subsequently selected with 2 mg/ml puromycin at approximately 50% confluence. Details on the shRNAs are provided in Supplemental Table 7.
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3

Lentiviral-Mediated Gene Silencing Protocol

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Gene silencing was performed using specific shRNAs delivered by a lentiviral system acquired from Sigma-Aldrich (Shanghai, China), following the instructions provided. Briefly, to yield lentiviruses containing specific shRNA sequences, 293T cells were co-transfected with 2.5 μg pMD2.G and 7.5 μg psPAX2 packaging plasmids and 10 μg of the pLKO.1 plasmid containing the specific shRNA for 24 h. The lentivirus containing cultured medium was collected and stored at −80°C as aliquots until further use. To deliver the specific shRNA construct, approximately 10% confluent cells were incubated with the lentivirus bearing specific shRNA in growth medium containing 8 mg/ml polybrene at 37° for 24 h. The transduced cells were then selected with 2 mg/ml puromycin. All shRNA constructs used are shown in Supplementary Table S2.
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4

Silencing UHRF1 via Lentiviral shRNA

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Human UHRF1 was generated by PCR amplification and subcloned into the pcDNA6-myc-His B (pcDNA6B) vector. Knockdown of UHRF1 was performed with the specific shRNAs delivered by a lentiviral system purchased from Sigma-Aldrich Corp. according to the instruction manual. In brief, to generate the lentivirus containing UHRF1 shRNA, 293FT cells were co-transfected with PMD2.G and psPAX2 compatible packaging plasmids and pLKO.1 plasmid bearing the UHRF1 shRNA for 24 hours. Next, the cultured medium was gently refreshed and collected 48 hours later. To infect cells, cells were cultured with the lentivirus bearing specific shRNA in growth medium containing 8 μg/ml polybrene. Afterwards, cells were subcultured and selected with 4 μg/ml puromycin. The sequence of the shRNA constructs targeting the UHRF1 gene is: UHRF1 (NM_013282): shUHRF1-1-TRCN0000273313 (Insert Sequence: 5’-CCGGCGTCATTTACCAC GTGAAATA CTCGAGTATTTCACGTGGTAAATGACGTTTTTG-3’), shUHRF1-2- TRCN0000273315 (Insert Sequence: 5’-CCGG ATGT GGGATGAGACGGAATTG CTCGAGCAATTCCG TCTCATCCCACATTTTTTG-3’), shUHRF1-3-TRCN0000 273317 (Insert Sequence: 5’-CCGGGCGCTGGCT CTCAACTGCTTTCTCGAGA AAGCAGTTGAGAGCC AGCGCTTTTTG-3’). The MISSION Non-Target shRNA control vector SHC002 (Insert Sequence: 5’-CCGGCAACAAGATGAAGAGCAC CAACTCGAGTTGGTGCTCTTCATCTTGTTGTTTTT-3’) was used as a control.
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5

Lentiviral Knockdown of PRDX6 Gene

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Knockdown of gene was performed with the specific shRNA delivered by a lentiviral system purchased from Sigma-Aldrich Corp, according to the instruction manual. 293T cells were co-transfected with pMD2.G and psPAX2 compatible packaging plasmids and pLKO.1 plasmid bearing the specific shRNA for 24 h. The cultured medium containing lentivirus was collected. Then Toledo cells were infected with the lentivirus bearing the shRNA in growth medium containing 8 µg/mL polybrene for 24 h. Afterwards, cells were subcultured and selected with 2 µg/mL puromycin. The shRNA constructs targeting the gene and referring to the sequence is: PRDX6 (NM_004905.2): TRCN0000052154 (5'-CCGGCCGAAAGGAGTCTTCACCAAATCGAGTTTGGTGAAGACTCCTTTCGGTTTTTG-3').
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