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Biflex 4 maldi tof ms

Manufactured by Bruker
Sourced in United States

The Biflex IV MALDI-TOF MS is a matrix-assisted laser desorption/ionization time-of-flight mass spectrometer. It is designed to perform high-performance mass analysis of a wide range of biomolecules, including proteins, peptides, and small molecules.

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4 protocols using biflex 4 maldi tof ms

1

MALDI-TOF-MS Protein Identification Protocol

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Samples were air-dried and analyzed by a Biflex IV MALDI-TOF-MS (Bruker, Billerica, MA, USA). The N2 laser was operated at an accelerating voltage of 19 kV with a wavelength of 337 nm (3 ns pulse length).
Data analysis was performed with the National Center for Biotechnology Information (NCBI) nr database using the MASCOT search program (Matrix Science, Boston, MA, USA). The following parameters were allowed: taxonomy restrictions to other firmicutes, 120 ppm mass tolerance in MS, one missed cleavage, oxidation (M) as a variable modification and carbamidomethyl (C) as a fixed modification. The confidence in the peptide mass fingerprinting (PMF) matches (p < 0.05) was based on the MOWSE score and confirmed by the accurate overlapping of the matched peptides with the major peaks of the mass spectrum. Only the best matches with high confidence levels were chosen when the software gave more than one eligible result.
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2

Synthesis of Cystine Dimethacrylate Crosslinker

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To synthesize cystine dimethacrylate (CDA), a redox-responsive crosslinker, L-cystine (0.48 g, 2 mmol) was dissolved with 5 mL DI water and 1 mL TEA was added to the solution. After complete dissolution of L-cystine, 2 mL MA was added dropwise into the solution. The mixture was then stirred vigorously and the reaction was allowed for 48 h at room temperature. Following the reaction, TEA and unreacted MA were extracted with diethyl ether. Then the pH value of the resulted solution was adjusted to 2 with hydrochloric acid. The sample was then lyophilized and the final product was obtained as an off-white powder. Its molecular structure was confirmed by 1HNMR (Varian Inova-500M, Varian Inc., Palo Alto, USA) with CO(CD3)2 (d-Acetone) as the solvent and tetramethylsilane (TMS) as the internal standard. Its molecular weight was confirmed by matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF, Bruker Biflex IV MALDI-TOFMS) mass spectrometry.
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3

Multimodal Analytical Techniques for Biomolecular Characterization

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Nuclear magnetic resonance (NMR) spectra were collected on a Bruker 300 MHz NMR spectrometer. Spectra are reported in parts per million (ppm) on the δ scale relative to the residual solvent as an internal standard. Size exclusion chromatography (SEC) was performed on a Hitachi Chromaster system equipped with an RI detector and an 8 μm, mixed bed, 300 × 7.5 mm cm PL aquagel–OH mixed medium column. 96-well plate assays (ELISA, carbazole) were analyzed using a Varioskan LUX multimode microplate reader. Matrix-assisted laser desorption ionization coupled with time-of-flight (MALDI-TOF) analysis was acquired via a Bruker Biflex IV MALDI-TOF MS in positive ion mode using sinapinic acid matrix. Bright field and fluorescence microscopy images were taken using ZEISS Axio Observer microscope. Radioactive thymidine assays were analyzed using a Beckman Coulter LS6500 Liquid Scintillation Counter.
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4

MALDI-TOF Identification of Bacterial Isolates

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Morphologically different colonies numbering 60 total were randomly selected from the plates from each heat treatment and company. The isolates were sent to the Animal Disease Research and Diagnostic Laboratory at South Dakota State University to be identified through matrix-assisted laser desorption/ionization and time-of-flight mass spectrometry (Bruker Daltonics Biflex IV MALDI-TOF MS, Billerica, MA). Prior to identification, isolates were freshly grown overnight on tryptic soy agar (Remel) infused with 5% sheep blood. Cultures were tested immediately after incubation to preserve the integrity of ribosomal proteins.
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