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Rcas9 protein

Manufactured by PNA Bio
Sourced in United States

The RCas9 protein is a recombinant Cas9 protein derived from Streptococcus pyogenes. It is a RNA-guided endonuclease that can be programmed with a single guide RNA to cleave specific DNA sequences.

Automatically generated - may contain errors

2 protocols using rcas9 protein

1

CRISPR Targeting of zebrafish elovl2 Gene

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Potential gRNA sequences for zebrafish elovl2 were searched for using the Chop-chop algorithm (https://chopchop.cbu.uib.no). Two elovl2 gRNA sequences were selected, GACAGCCTATTTGGAGAAAG in exon 2 and TTCCCAGGTAGATTGTTAGG in exon 3. The control gRNA used (TGAGTATTCGCATGCAACTA) does not target any known zebrafish nucleotide sequence.
GRNA oligonucleotides (Integrated DNA Technologies (IDT), Coraville Iowa) were synthesized by and were duplexed individually with tracrRNA (Integrated DNA Technologies (IDT) Coraville, IA, USA). The injection mix containing 250 ng/μL of gRNA duplex complex (both gRNAs), 500 ng/μL rCas9 protein (PNA Bio CP01-20 Thousand Oaks, CA, USA) and duplex buffer (IDT) was injected into one cell stage zebrafish embryos. The embryos were maintained in a 28 °C incubator. The level of DNA editing was determined through DNA Sanger sequencing (Genewiz La Jolla, CA, USA) and analysis using the ICE v2CRISPR Analysis Tool (Synthego (Redwood City, CA, USA), found at https://www.synthego.com/products/bioinformatics/crispr-analysis) [20 ] Sequencing primers for elovl2 gRNA exon 2 were 5′ TTGAAGCTTGCAATCTGACTGT3′ and 5′ TGGAACGTTCTATTGAGTGTCG 3′. Sequencing primers for elovl2 gRNA exon 3 were 5′ TTTGTTTGATGTCAGATACCCG3′ and 5′ ATGAGCACATGGACTGCTATTG3′.
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2

Zebrafish elovl2 gene editing

Check if the same lab product or an alternative is used in the 5 most similar protocols
Potential gRNA sequences for zebrafish elovl2 were searched for using the Chop-chop algorithm (https://chopchop.cbu.uib.no). Two elovl2 gRNA sequences were selected, GACAGCCTATTTGGAGAAAG in exon 2 and TTCCCAGGTAGATTGTTAGG in exon 3. The control gRNA used (TGAGTATTCGCATGCAACTA) does not target any known zebrafish nucleotide sequence.
GRNA oligonucleotides (Integrated DNA Technologies (IDT), Coraville Iowa) were synthesized by and were duplexed individually with tracrRNA (Integrated DNA Technologies (IDT) Coraville, Iowa). The injection mix containing 250 ng/μl of gRNA duplex complex (both gRNAs), 500 ng/μl rCas9 protein (PNA Bio CP01-20 Thousand Oaks, California) and duplex buffer (IDT) was injected into one cell stage zebrafish embryos. The embryos were maintained in a 28°C incubator. The level of DNA editing was determined through DNA Sanger sequencing (Genewiz La Jolla CA ) and analysis using the ICE v2CRISPR Analysis Tool (Synthego (Redwood City, CA), found at https://www.synthego.com/products/bioinformatics/crispr-analysis)
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