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8 protocols using mouse anti α synuclein

1

Immunofluorescence Staining of Cultured Cells

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Cells were cultured on a round slide. After treatment, the slide was washed with 0.01 M PBS and fixed with 4% PFA as previously described (34 (link)). The primary antibody (Mouse anti-α-synuclein: BD, USA; Rabbit anti-NeuN: Abcam, USA) was added and incubated with the cells for 48 h at 4°C. Then, the slide was exposed to the Alexa Fluor® antibody (Invitrogen, USA) and incubated for 1 h at 37°C. The nucleic acids were stained with DAPI (Invitrogen, USA). Following a final wash and mounting with anti-fade medium (Sigma, USA), images were acquired using a fluorescence microscope (Nikon, Japan). The fluorescence intensity was determined using Image-Pro Plus, Version 6.0 (MediaCybernetics, Inc., USA).
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2

Protein Extraction and Western Blot

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Directly after image acquisition at the microscope, cells were washed twice with sterile PBS and then lysed on ice for 10 min in lysis buffer as previously described17 (link) or RIPA buffer (50 mM Tris, 150 mM NaCl, 1% Triton X-100, 2 mM EDTA, 0.5% DOC, 0.1% SDS, complete protease inhibitor cocktail mix, Roche). Lysates were centrifuged at 13 000 r.p.m. for 10 min at 4 °C. Supernatants were collected and protein concentration was determined by the Bradford method. Samples were stored at −80 °C until used. 10 to 30 μg of protein per slot were separated on a 12% SDS polyacrylamide gel and transferred to a polvinylidene difluoride membrane. Membranes were incubated for 1 h in TBST (50 mM Tris, 150 mM NaCl, 0.05% Tween, pH 7.5) containing 5% milk to saturate all non-specific binding sites. Incubation with primary antibodies was overnight at 4 °C in 1% milk+TBST (1 : 1500 goat anti-DJ-1, Santa Cruz Biotechnology, Dallas, TX, USA; #Sc-27006; 1 : 3000 mouse anti-α-Synuclein, BD #610787; 1 : 5000 mouse anti-β-actin, Sigma-Aldrich, St. Louis, MO, USA; #A5441). Blots were developed using horseradish peroxidase (HRP)-conjugated secondary antibodies (anti-goat 1 : 10 000 Jackson Immunoresearch, West Grove, PA, USA; #705-035-003, anti-mouse 1 : 10 000 Sigma #50185-ILM-F) and the Immobilon chemiluminescent HRP substrate (Millipore, Billerica, MA, USA).
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3

Immunostaining of α-synuclein and SOD1 in mouse brain

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Wt C57Bl/6 mice (1–3 months old, female) were anesthetized with ketamin/xylazin and perfused with PBS. After incubation of brains with 30 % sucrose for 24 h at 4 °C, brain tissue was embedded in TissueTek®O.C.T (Sakura, Alphen a.d.R., Nehterland), frozen at −80 °C and cut in 12 μm sections using a cryostat. Sections were fixed with 2 % PFA for 30 min, permeabilized with 0,5 % saponine for 10 min and treated with 3 % H2O2 for 10 min, followed by blocking with Roti®-ImmunoBlock (Roth, Karlsruhe, Germany) for 1 h. Samples were co-immunostained with primary antibodies mouse-anti-α-synuclein (1:200, syn-1,BD,New Jersey, USA) and rabbit-anti-SOD1 (1:100, ADI-SOD100, Enzo life science, New York, USA) in Roti®-ImmunoBlock for 1 h 45 min at RT. After washing with PBS, sections were blocked with 5 % goat-serum in PBS for 15 min and incubated with fluorophore conjugated secondary antibodies (1:750, goat-anti-rabbit-Alexa546 and goat-anti-mouse-Alexa-488, both Life technology, Carlsbad, USA) in 5 % goat serum for 1 h. Then sections were washed with PBS, incubated with xylol for 2 min and 100 % ethanol for 3 min and coverslipped using DAPI Fluoromont®G (SouthernBioTech, Birmingham, USA). To avoid unspecific binding of secondary antibodies, sections were also single stained with either α-synuclein or SOD1 primary antibody and both secondary antibodies.
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4

Antibody Characterization for VAPB and PTPIP51

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Rabbit and rat antibodies to VAPB and PTPIP51 were as described [20 (link)]. Mouse anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH), mouse anti-hemagglutinin (HA), mouse anti-myc 9B11 and rabbit anti-glycogen synthase kinase-3β (GSK3β) phosphorylated on serine-9 (inactive GSK3β) were from Cell Signalling. Rabbit anti-mitofusin-2, rabbit anti-HA, mouse anti-heat shock protein-60 (HSP60) and mouse anti-neurofilament heavy-chain (NFH) (N52) were from Sigma. Rabbit (sc-7011) and mouse (211) anti-α-synuclein, rabbit anti-translocase of the outer mitochondrial membrane protein-20 (TOM20), rabbit anti-fatty acid coenzyme A ligase long-chain 4 (FACL4) and mouse anti-Sigma-1 receptor were from Santa Cruz Biotechnology. Mouse anti-α-synuclein and mouse anti-calnexin were from BD Biosciences. Rabbit anti-EGFP and mouse anti-β-actin were from Abcam. Rabbit anti-PTPIP51 and chicken anti-MAP2 were from Genetex. Mouse anti-protein disulphide isomerase (PDI) was from Affinity Bioreagents, rabbit anti-myc was from Upstate and rabbit anti-GSK3β was from StressGen.
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5

Western Blot and ChIP Antibody Characterization

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The antibodies for Western blot analysis used were: mouse anti-α-tubulin (1:10,000; Sigma, clone B512), rat anti-α-synuclein (1:100; clone 15G7), mouse anti-α-synuclein (1:1000; BD, Synuclein-1), rabbit anti-GFP (1:1000; Santa Cruz), rabbit anti-H3 (1:16000; abcam), rabbit anti-H3K4me3 (1:16000; Abcam), rabbit anti-H3K9me1 (1:16000; Abcam), rabbit anti-H3K9me2 (1:4000; CST), rabbit anti-H3K9me3 (1:16000; Abcam), rabbit anti-H3K27me3 (1:8000; Millipore), rabbit anti-H3K9ac (1:8000; Millipore), rabbit anti-H3K14ac (1:8000; EpiGentek), rabbit anti-H4 (1:16000; Abcam), rabbit anti-H4K12Ac (1:16000; Abcam), rabbit anti-HP1α (1:1000; CST), rabbit anti-EHMT2 (1:2000; abcam), rabbit anti-p38 (1:1000; CST), goat anti-REST (1:250; Santa Cruz) and goat anti-SNAP25 (1:1000; Santa Cruz). The HRP-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories (1:10,000). The antibodies for chromatin immunoprecipitation (ChIP) used were: rabbit anti-EHMT2 (10 μg; Millipore), mouse anti-H3K9me2 (4 μg; Abcam), and rabbit anti-REST (10 μg; Millipore).
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6

Immunofluorescence Imaging of Larval Eyes

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Larval eye discs were fixed for 10 min in 4% paraformaldehyde. Primary antibodies used were: mouse anti-α-synuclein (BD Transduction, 1:500) and rabbit anti-Nedd4 (Abcam, 1:500). The Cy5 conjugated (Jackson ImmunoResearch, 1:1000) secondary antibody was used. Samples were imaged using a Zeiss LSM 510 META confocal microscope.
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7

Protein Expression Analysis in Genotypes

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For each genotype 5 male adult heads were homogenized in lysis buffer (150 mM NaCl, 10 mM Tris pH7.4, 1% Triton-X, 0.1% SDS and complete protease inhibitor cocktail, SIGMA). Samples were quantified and loaded on a NuPAGE 10–12% Bis–Tris gel (Invitrogen). The following primary antibodies were: mouse anti-tubulin (Developmental Studies Hybridoma Bank, 1:1000), mouse anti-α-synuclein, Syn1 (BD Transduction, 1:400), rabbit anti-Nedd4 (Abcam, 1:5000), and rabbit anti-actin (Sigma, 1:1000). Blots were visualized using HRP-conjugated secondary antibodies and the ECL Detection Reagent (Amersham).
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8

Immunohistochemical Analysis of Parkinson's Disease

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Mouse anti-TH (1:10000, 1:2000 for SNc and striatum respectively, clone LNC1, Millipore); mouse anti-α-synuclein (1:1000, BD Transduction Laboratories); mouse anti-human-α-synuclein (1:1000, clone LB509, Invitrogen); rabbit anti-α-synuclein-P-S129 (1:1000, Abcam ab59264); goat anti-HSP60 (1:20, Santa Cruz Biotechnology); Rabbit anti-4-HNE (1:200, Alpha Diagnostic).
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