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37 protocols using pgc 1α

1

Cardiac Lipid Metabolism and Angiogenesis

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We analysed the expression of cardiac lipid metabolism proteins by the Western blot method as previously described in detail.28 As severe LV hypertrophy is related to the impaired angiogenesis pathway, we also studied the expression of key proteins that regulate angiogenesis and signal hypoxia. Primary antibodies: HIF1α (ab463, Abcam; 1:500); fatty acid transporter (CD36; ab133625, Abcam; 1:1000); carnitine palmitoyltransferase 1 (CPT1; NBP1‐59576, Novus Biological; 1:1000); fatty acid‐binding protein (FABP3; ab133585, Abcam; 1:1000); acyl‐CoA dehydrogenase (ACADL; ab196655, Abcam; 1:3000); medium‐chain acyl‐CoA dehydrogenase (MCAD; ab110296, Abcam; 1:1000); 2,4‐dienoyl‐CoA reductase (DECR1; ab198848, Abcam; 1:2000). AMP‐activated protein kinase (AMPK; 2532 s, Cell Signaling; 1:1000); phosphorylated AMPK (Thr 172) (pAMPK; 2535 s, Cell Signaling; 1:500); SIRT1 (8469 s, Cell Signaling; 1:1000); PPARα (ab8934, Abcam; 1:1000); retinoid X receptor (RXRα; 3085 s, Cell; 1:1000); peroxisome proliferator‐activated receptor gamma coactivator 1α (PGC1α; 20,658‐1‐AP, Proteintech; 1:1000). Targeted bands were normalized to the expression of cardiac GAPDH (sc‐32,233, Santa Cruz Biotechnology; 1:2000).
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2

Mitochondrial Dynamics Protein Analysis

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Proteins collected from myocardial tissues and H9C2 cells were lysed by RIPA lysate (Beijing Applygen Technolog Inc., China) according to the manufacturer's instruction. The protein content was quantified using the BCA method. After addition of loading buffer and boiling for 5 minutes at 99°C, protein samples (25 mg per sample) were separated by 10% Tris/Glycine SDS-PAGE and then electrotransferred to PVDF membranes at 300 mA for 1.5 h. Membranes were incubated in TBST containing 5% nonfat milk for 1 hours. Then the membranes were incubated with different primary antibodies including rabbit monoclonal antibodies against MFN1/2 (Proteintech), OPA1 (Proteintech), FIS1 (Proteintech), DRP1 (Proteintech), PGC-1α (Proteintech), NRF1(Proteintech), TFAM (Proteintech), and GAPDH (Proteintech) overnight at 4°C. The blots were washed with TBST three times and then incubated with anti-rabbit IgG (1 : 2000) for 4 h at 4°C. After washing three times with TBST, the immunolabeling was detected using Omni ECL reagent (EpiZyme, China) for 1 min at room temperature. The ultimate expression of every single protein was standardized by GAPDH. The band grayscale analysis was performed using Image J software.
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3

Quantitative Analysis of Liver Protein Expression

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The protein of liver tissues and HepG2 cells was lysed and extracted using Radio Immunoprecipitation Assay (RIPA) lysis buffer (Beijing Beyotime, China), and the concentration was quantified using a BCA assay kit (Solarbio, PC0020, Beijing, China). The denatured protein samples (50 µg) from each group were loaded on 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred onto polyvinylidene fluoride membranes (PVDF) (Millipore, Bedford, MA, USA). Each PVDF membrane was blocked with 1×TBST containing 5% skimmed milk and incubated with primary antibodies at 4°C refrigerator overnight and incubated with secondary antibodies for 1 h in the dark. All the primary antibodies in the Western blot experiment are as follows: PGC1α (1:1000, Proteintech), PPARα (1:1000, Proteintech), PINK1 (1:1000, Proteintech), Parkin (1:1000, Affinity), ATG7 (1:1000, Affinity), SQSTM1/p62 (1:1000, Affinity), FAS (1:1000, ab128856), SREBP-1c (1:1000, A15586), LC3 I/II (1:1000, AB Clonal), and β-actin (1:10000, AB Clonal). The chemiluminescence intensity of all membranes was visualized with enhanced chemiluminescence system. The gray value of protein strips was analyzed using the Image J software.
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4

Comprehensive Antibody Panel for Molecular Analyses

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The primary antibodies used in this investigation are listed below, along with the dilutions for immunofluorescence (IF) and western blotting (WB) analysis staining analysis: β-catenin (cat. 8480, CST, Danvers, Massachusetts, USA, 1:1000 for WB), active β-catenin (cat. 8814, CST, 1:200 for IF, 1:1000 for WB), MITF (cat. ab12039, Abcam, Cambridge, UK, 1:1000 for WB), PGC1α (cat. 66369-1-Ig, Proteintech, Wuhan, China, 1:1000 for WB), SCD1 (cat. 28678-1-AP, Proteintech, 1:1000 for WB), Ki67 (cat. 9449, CST, Boston, MA, USA, 1:400 for IF) and PTGS2 (cat. 12282, CST, 1:800 for IF). Secondary antibodies for WB were horseradish peroxidase-conjugated goat antirabbit or anti-mouse IgG (cat. 7074P2, CST, 1:3000). Secondary antibodies for IF were goat anti-mouse IgG-Alexa Fluor 488 conjugated (zhuangzhiBIO, Xi’an, China, 1:200) and goat antirabbit IgG-Cy3 conjugated (zhuangzhiBIO, 1:200).
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5

Western Blot Analysis of Thermogenesis Markers

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The tissue was ground in liquid nitrogen. The tissue lysis buffer with protease inhibitor cocktail added to protein powder. The mixture was centrifuged at 12000 rpm for 15min, 4 times. Concentrations of protein were determined by BCA assay. 20 μg protein was separated by 12% or 10% acrylamide SDS-PAGEE, and the band transferred to PVDF membrane and conducted for 60min. The membrane was blocked by 5% non-fat powder milk in TBST and incubated at 4 °C with primary antibody UCP1 (proteintech)、PGC-1α (CST)、PPAR-γ (proteintech) overnight. Then incubated with the secondary antibody for 2 h at room temperature after three times TBST rinsed. Membranes were taken images with enhanced chemiluminescence (Millipore). Relative quantities of protein were compared with Tubulin (proteintech) expression. We use imageJ to measure the pixel density of the UCP1, PPAR-γ and PGC1-α band in each group.
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6

Liver Protein Quantification for WB

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Total protein was extracted and quantified from liver tissue homogenates for western blotting. Primary antibodies included PPARα (Affinity, Changzhou, China), PGC-1α (Proteintech, Wuhan, China), GAPDH (Proteintech, Wuhan, China), and Blots were analysed using chemiluminescence with imaging system (Bio-Rad, CA, USA).
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7

Protein Expression Analysis of Mouse Brain and Cells

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Mouse brain tissues or HT22 cells were homogenized in RIPA buffer (Beyotime, Shanghai, China) containing protease and phosphatase inhibitors (Roche, Mannheim, Germany) on ice and stored at − 80 °C until use. Protein concentrations were determined using a BCA assay kit (Thermo Fisher, Waltham, MA, USA). The proteins were separated via sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Darmstadt, Germany). After blocking, the membranes were incubated with primary antibodies at 4 °C overnight, then were washed with TBST and incubated with appropriate secondary antibodies (anti-Rabbit: 1:3000, Cat# 7074S, RRID:AB_2099233, Cell Signaling Technology; anti-Mouse: 1:3000, Cat# 7076S, RRID:AB_330924, Cell Signaling Technology). Proteins were visualized using a chemiluminescent reagent (Amersham-GE, Pittsburgh, USA). The following primary antibodies were used (dilution, source): Fgr (1:500, Cat# DF3081, RRID:AB_2835464, Affinity Biosciences), SIRT1 (1:1000, Cat# 8469S, RRID:AB_10999470, Cell Signaling Technology), PGC-1α (1:1000, Cat# 66369-1-Ig, RRID:AB_2828002, Proteintech, Wuhan, China), DRP1 (1:1000, Cat# 8570S, RRID:AB_10950498, Cell Signaling Technology).
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8

Western Blot Analysis of Protein Levels

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Protein levels were measured by WB with β-actin as the loading control. Protein was extracted from atria samples or cells and quantitated by a BCA assay. Equal amount (10–30 μg) of protein was loaded and separated by SDS-PAGE using 10 or 12% acrylamide gradients, and later transferred to nitrocellulose membranes. The membranes were blocked with 5% skim milk and incubated with antibodies against total-AMPK (1:1,000; Cell Signaling Technology/CST, Massachusetts, United States), CD36 (1:1,000; Abcam), collagen Ⅰ (1:1,000; Abcam), collagen Ⅲ (1:1,000; Abcam), connexin-43 (1:200; Invitrogen), CPT1B (1:1,000; Proteintech), GLUT4 (1:500; Proteintech), NFκB (1:1,000; Proteintech), NRF2 (1:1,000; Proteintech), phoso-AMPK (Thr172; 1:1,000; CST), phoso-Akt (Ser473; 1:1,000; CST), phoso-NFκB (1:1,000; CST), PGC1α (1:1,000; Proteintech), SOD2 (1:1,000; Proteintech), TGF-β (1:1,000; Abcam), α-SMA (1:1,000; CST), β-actin (1:5,000; Proteintech). Protein levels were quantified as the intensity of bands using ImageJ software (NIH systems) and standardized to β-actin. Abbreviations are fully illustrated in corresponding figure legends.
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9

Investigating Key Apoptotic Regulators

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The primary antibodies Bax (Cat# AF1020), Bcl-2 (Cat# AF6139), TFAM (Cat# DF3232), and TNF-α (Cat# AF7014) were acquired from Affinity Biosciences (Cincinnati, OH, USA). Antibody for GAPDH (Cat# 2118S) was obtained from Cell Signaling Technology, Inc (Danvers, MA, USA). Antibodies for SIRT1 (Cat# 60303-1-Ig), PGC-1α (Cat# 66369-1-Ig), Nrf2 (Cat# 16396-1-AP), PARP1 (Cat# 13371-1-AP), and Caspase3 (Cat# 19677-1-AP) were purchased from Proteintech Group, Inc (Wuhan, China). Goat anti-rabbit IgG-HRP (Cat# 98164S) and anti-mouse IgG-HRP (Cat# 91196S) were purchased from Cell Signaling Technology, Inc (Danvers, MA, USA) and Proteintech Group, Inc (Wuhan, China), respectively.
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10

Protein Expression Analysis of Hepatic AdipoR1/R2

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Protein extracts were extracted from liver tissues or HepG2 cells using the Protein Lysis Kit (Beyotime, China) and then separated on 12% SDS-PAGE gels. Then, gels were transferred to polyvinylidene difluoride (PVDF) membranes and PVDF membranes were incubated with primary antibodies against AdipoR1, AdipoR2 (Affinity Biosciences, China), AMPK, phosphorylated-AMPK (p-AMPK), LKB1, phospho-LKB1 (p-LKB1) (Cell Signaling Technology, MA, USA), SIRT1, nuclear factor erythroid-2-related factor 2 (Nrf2), carnitine palmitoyltransferase-1A (CPT1A), silent information regulator transcription 3 (SIRT3), PGC1α and GAPDH (Proteintech Group, USA) overnight at 4 °C. The PVDF membranes were washed and incubated with secondary antibodies at room temperature for 1h. Finally, Omni-ECLTM Femto Light Chemiluminescence Kit (EpiZyme, China) was used to detect specific protein expression. The images were obtained using Chemi-Lumin One Ultra (Tanon, China).
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